RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 SLMAPQ14BN4 828 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 CTF1Q16619 201 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 KLHL26Q53HC5 615 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 KRTCAP3Q53RY4 240 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 ODF2Q5BJF6 829 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 ZRANB3Q5FWF4 1079 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 SHC4Q6S5L8 630 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 SPATA19Q7Z5L4 167 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 UNC45BQ8IWX7 931 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 PM20D2Q8IYS1 436 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 CEP57L1Q8IYX8 460 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 CARNMT1Q8N4J0 409 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 SLC5A8Q8N695 610 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 PAPD5Q8NDF8 572 aaKnown RBP4.94□□□□□ -1.62
SCFD1-209ENST00000553280 BBS10Q8TAM1 723 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 UTP15Q8TED0 518 aaKnown RBP4.94□□□□□ -1.62
SCFD1-209ENST00000553280 EXT2Q93063 718 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 SLC25A28Q96A46 364 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 OR6C1Q96RD1 312 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 WNT5BQ9H1J7 359 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 RETREG1Q9H6L5 497 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 TRPV4Q9HBA0 871 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 DDX43Q9NXZ2 648 aaKnown RBP4.94□□□□□ -1.62
SCFD1-209ENST00000553280 FBXL2Q9UKC9 423 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 B3GALT5Q9Y2C3 310 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 LOXL2Q9Y4K0 774 aa4.94□□□□□ -1.62
SCFD1-209ENST00000553280 A0A0U1RQK1 487 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 RPS10-NUDT3A0A1W2PQS6 291 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 ZNF320A2RRD8 509 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 TRIM64A6NGJ6 449 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 TRIM64BA6NI03 449 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 TRIM77I1YAP6 450 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 CLIC2O15247 247 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 SLC16A5O15375 505 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 SPRY3O43610 288 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 FMO6PO60774 539 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 MED24O75448 989 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 CH25HO95992 272 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 ZFYP08048 801 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-209ENST00000553280 CDK4P11802 303 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 PDGFRAP16234 1089 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 TNFRSF1BP20333 461 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 ITGB8P26012 769 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 MTHFRP42898 656 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 CLCNKAP51800 687 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 CTSCP53634 463 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 NAGLUP54802 743 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 SSBP2P81877 361 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-209ENST00000553280 YWHAHQ04917 246 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-209ENST00000553280 HNRNPA0Q13151 305 aaKnown RBP4.93□□□□□ -1.62
SCFD1-209ENST00000553280 PTK6Q13882 451 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 KCNT1Q5JUK3 1230 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 FNBP1LQ5T0N5 605 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 MORN5Q5VZ52 161 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 ALS2CLQ60I27 953 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 TYW3Q6IPR3 259 aaKnown RBP4.93□□□□□ -1.62
SCFD1-209ENST00000553280 PLBD1Q6P4A8 553 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 DET1Q7L5Y6 550 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 CCDC170Q8IYT3 715 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 TMEM199Q8N511 208 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 NEXN-AS1Q8NBZ9 246 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 OR2AK2Q8NG84 335 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 THAP6Q8TBB0 222 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 OIT3Q8WWZ8 545 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 ROBO4Q8WZ75 1007 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 CORO2AQ92828 525 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 PRMT6Q96LA8 375 aaPredicted RBP4.93□□□□□ -1.62
SCFD1-209ENST00000553280 C16orf70Q9BSU1 422 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 PCDH9Q9HC56 1237 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 TRNAU1APQ9NX07 287 aaKnown RBP4.93□□□□□ -1.62
SCFD1-209ENST00000553280 PADI3Q9ULW8 664 aa4.93□□□□□ -1.62
SCFD1-209ENST00000553280 PRAG1Q86YV5 1406 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 ANKUB1A6NFN9 424 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 ENO4A6NNW6 628 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 SOCS6O14544 535 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 PTGESO14684 152 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 RGS14O43566 566 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 GBAP04062 536 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 PSMA3P25788 255 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 CDC25CP30307 473 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 HNRNPKP61978 463 aaKnown RBP eCLIP4.92□□□□□ -1.62
SCFD1-209ENST00000553280 PPP2R5CQ13362 524 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 NFE2L1Q14494 772 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 MEP1BQ16820 701 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 TYSND1Q2T9J0 566 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 ODF3L2Q3SX64 289 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 NHSL2Q5HYW2 709 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 FAM69BQ5VUD6 431 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 ZBTB49Q6ZSB9 765 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 ABI3BPQ7Z7G0 1075 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 GPR180Q86V85 440 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 NANOGP1Q8N7R0 232 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 SLC4A11Q8NBS3 891 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 ZNF548Q8NEK5 533 aaPredicted RBP4.92□□□□□ -1.62
SCFD1-209ENST00000553280 ACVR1CQ8NER5 493 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 HMGCLL1Q8TB92 370 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 GRK7Q8WTQ7 553 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 PTP4A1Q93096 173 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 SLAMF9Q96A28 289 aa4.92□□□□□ -1.62
SCFD1-209ENST00000553280 SPSB1Q96BD6 273 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms