RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 HSFX1Q9UBD0 423 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 STOML2Q9UJZ1 356 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 PHF24Q9UPV7 400 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 ZNF711Q9Y462 761 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 PCDHB9Q9Y5E1 797 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 ST14Q9Y5Y6 855 aa20.97■□□□□ 0.95
VPS28-205ENST00000526204 A0A1B0GTW7 788 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 FAM149AA5PLN7 773 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 DLGAP1O14490 977 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 TPST1O60507 370 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 SNAP91O60641 907 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 BMP10O95393 424 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 ASLP04424 464 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 IRF1P10914 325 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 MTHFD1P11586 935 aaKnown RBP20.96■□□□□ 0.95
VPS28-205ENST00000526204 RFC2P35250 354 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 RHOAP61586 193 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 FXNQ16595 210 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 FUT11Q495W5 492 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 LETMD1Q6P1Q0 360 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 LRRC43Q8N309 656 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 RNF38Q9H0F5 515 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 CD320Q9NPF0 282 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 SMOXQ9NWM0 555 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 OAZ3Q9UMX2 235 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 GBF1Q92538 1859 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 H0Y626 953 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 H3BSA7 217 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 PLOD2O00469 737 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 ZNF7P17097 686 aaPredicted RBP20.96■□□□□ 0.95
VPS28-205ENST00000526204 RPL17P18621 184 aaKnown RBP20.96■□□□□ 0.95
VPS28-205ENST00000526204 IL12AP29459 219 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 CASP2P42575 452 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 ALDH7A1P49419 539 aaKnown RBP20.96■□□□□ 0.95
VPS28-205ENST00000526204 TAF12Q16514 161 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 EP400NLQ6ZTU2 488 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 TRIM8Q9BZR9 551 aa20.96■□□□□ 0.95
VPS28-205ENST00000526204 IQCF5A8MTL0 148 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 PDLIM1O00151 329 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 CLGNO14967 610 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 RAD51BO15315 384 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 LATS1O95835 1130 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 OTCP00480 354 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 CAPN1P07384 714 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 UGT1A6P19224 532 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 ARL1P40616 181 aaPredicted RBP20.95■□□□□ 0.94
VPS28-205ENST00000526204 PPP3CCP48454 512 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 SLC36A3Q495N2 470 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 LHX8Q68G74 356 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 TRMT2BQ96GJ1 504 aaKnown RBP20.95■□□□□ 0.94
VPS28-205ENST00000526204 CLPBQ9H078 707 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 RSL24D1Q9UHA3 163 aaKnown RBP20.95■□□□□ 0.94
VPS28-205ENST00000526204 A0A087WXM4 84 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 ARNTLO00327 626 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 NELFEP18615 380 aaKnown RBP20.95■□□□□ 0.94
VPS28-205ENST00000526204 AP1S1P61966 158 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 GTF2H2Q13888 395 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 PTPRRQ15256 657 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 ARMC12Q5T9G4 340 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 PTRHD1Q6GMV3 140 aaKnown RBP20.95■□□□□ 0.94
VPS28-205ENST00000526204 GTF2H2CQ6P1K8 395 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 TTC33Q6PID6 262 aaPredicted RBP20.95■□□□□ 0.94
VPS28-205ENST00000526204 IL27RAQ6UWB1 636 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 GOLGA7Q7Z5G4 137 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 SFRP1Q8N474 314 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 CDK15Q96Q40 435 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 C19orf43Q9BQ61 176 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 FEM1AQ9BSK4 669 aa20.95■□□□□ 0.94
VPS28-205ENST00000526204 ACOX3O15254 700 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 SEC24AO95486 1093 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 EFEMP2O95967 443 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 RPS3P23396 243 aaKnown RBP eCLIP20.94■□□□□ 0.945e-7■■□□□ 13
VPS28-205ENST00000526204 RGS4P49798 205 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 KIAA1841Q6NSI8 718 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 SBSNQ6UWP8 590 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 CARNMT1Q8N4J0 409 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 DCBLD1Q8N8Z6 715 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 PDPRQ8NCN5 879 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 ZNF461Q8TAF7 563 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 OSCP1Q8WVF1 389 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 ISG20Q96AZ6 181 aaKnown RBP20.94■□□□□ 0.94
VPS28-205ENST00000526204 TMEM74Q96NL1 305 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 INTS7Q9NVH2 962 aaKnown RBP20.94■□□□□ 0.94
VPS28-205ENST00000526204 SLAMF8Q9P0V8 285 aa20.94■□□□□ 0.94
VPS28-205ENST00000526204 FFAR2O15552 330 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 TBL1XO60907 577 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 LDLRP01130 860 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 MSH3P20585 1137 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 MZF1P28698 734 aaPredicted RBP20.93■□□□□ 0.94
VPS28-205ENST00000526204 CDK9P50750 372 aaKnown RBP20.93■□□□□ 0.94
VPS28-205ENST00000526204 LYSMD3Q7Z3D4 306 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 SEZ6LQ9BYH1 1024 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 TIMMDC1Q9NPL8 285 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 MAGEL2Q9UJ55 1249 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 GNPTGQ9UJJ9 305 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 PCDHB3Q9Y5E6 796 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 TANC1Q9C0D5 1861 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 C2orf78A6NCI8 922 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 TRIM64CA6NLI5 447 aa20.93■□□□□ 0.94
VPS28-205ENST00000526204 OR7A17O14581 309 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms