RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 KRTAP7-1Q8IUC3 87 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 CEP97Q8IW35 865 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 SLC5A8Q8N695 610 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 GCSAMQ8N6F7 178 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 STPG4Q8N801 248 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 TRIM58Q8NG06 486 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 CTCFLQ8NI51 663 aaPredicted RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 TAS1R2Q8TE23 839 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 RSPH1Q8WYR4 309 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 TM9SF4Q92544 642 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 SGCDQ92629 289 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 STAMBPL1Q96FJ0 436 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 MYCBPQ99417 103 aaPredicted RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 RBM4Q9BWF3 364 aaKnown RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 ITPAQ9BY32 194 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 MUC13Q9H3R2 512 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 MBNL1Q9NR56 388 aaKnown RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 SUN2Q9UH99 717 aa3.73□□□□□ -1.81
CD44-217ENST00000525348 BAZ1BQ9UIG0 1483 aaKnown RBP3.73□□□□□ -1.81
CD44-217ENST00000525348 SNED1Q8TER0 1413 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 PDS5BQ9NTI5 1447 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 HMGXB3Q12766 1538 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 SMIM1B2RUZ4 78 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 MPHOSPH10O00566 681 aaKnown RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 CIDEAO60543 219 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 WDHD1O75717 1129 aaPredicted RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 PDE9AO76083 593 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 CCNDBP1O95273 360 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 GCNT3O95395 438 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 INHBAP08476 426 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 ERVK-10P10266 1014 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 RARGP13631 454 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 ANXA7P20073 488 aaKnown RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 MSH3P20585 1137 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 NR2F2P24468 414 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 PSMA4P25789 261 aaKnown RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 NFKBIAP25963 317 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 ALDH4A1P30038 563 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 MAPK4P31152 587 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 PIK3CAP42336 1068 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 IFT88Q13099 833 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 MVPQ14764 893 aaKnown RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 ASTE1Q2TB18 679 aaPredicted RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 ZNF876PQ49A33 203 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 ZC2HC1CQ53FD0 456 aaPredicted RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 GKAP1Q5VSY0 366 aaPredicted RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 SFMBT2Q5VUG0 894 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 SNX30Q5VWJ9 437 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 NOTCH2NLQ7Z3S9 236 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 TRPT1Q86TN4 253 aaKnown RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 LONP2Q86WA8 852 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 APLFQ8IW19 511 aaPredicted RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 WDSUB1Q8N9V3 476 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 LGALS12Q96DT0 336 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 ABHD8Q96I13 439 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 OR2A14Q96R47 310 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 NCAPGQ9BPX3 1015 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 PAIP2Q9BPZ3 127 aaKnown RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 FSD1Q9BTV5 496 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 TMEM39BQ9GZU3 492 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 GFRA4Q9GZZ7 299 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 PNNQ9H307 717 aaKnown RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 SLC52A3Q9NQ40 469 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 IRAK4Q9NWZ3 460 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 CWC25Q9NXE8 425 aaPredicted RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 EHD2Q9NZN4 543 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 ORC3Q9UBD5 711 aaPredicted RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 AASSQ9UDR5 926 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 TSPYL4Q9UJ04 414 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 ACAD8Q9UKU7 415 aa3.72□□□□□ -1.81
CD44-217ENST00000525348 CORO1CQ9ULV4 474 aaPredicted RBP3.72□□□□□ -1.81
CD44-217ENST00000525348 SMARCA4P51532 1647 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 TEX13DA0A0J9YY54 714 aaPredicted RBP3.71□□□□□ -1.82
CD44-217ENST00000525348 OR2M5A3KFT3 312 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 TMEM8BA6NDV4 472 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 A8MZ25 164 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 ANKRD66B4E2M5 251 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 BLOC1S5-TXNDC5H3BN57 136 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 CTAGE5O15320 804 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 OGG1O15527 345 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 TIMM44O43615 452 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 LDLRP01130 860 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 TFAP2AP05549 437 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 LIPFP07098 398 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 KRT19P08727 400 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 CD48P09326 243 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 VDRP11473 427 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 LAMP2P13473 410 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 MMP15P51511 669 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 GPR143P51810 404 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 CTSCP53634 463 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 EIF5P55010 431 aaKnown RBP3.71□□□□□ -1.82
CD44-217ENST00000525348 MLLT10P55197 1068 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 KRTAP10-5P60370 271 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 KRTAP10-12P60413 245 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 GNB1P62873 340 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 POU5F1Q01860 360 aaKnown RBP3.71□□□□□ -1.82
CD44-217ENST00000525348 KRT32Q14532 448 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 CCDC6Q16204 474 aa3.71□□□□□ -1.82
CD44-217ENST00000525348 JADE1Q6IE81 842 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms