RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 KIAA0408Q6ZU52 694 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 MFSD6LQ8IWD5 586 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 OR8H2Q8N162 312 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 PELI3Q8N2H9 469 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 TTC30BQ8N4P2 665 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 ZNF540Q8NDQ6 660 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 ANKRD49Q8WVL7 239 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 DEPDC7Q96QD5 511 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 SLC39A8Q9C0K1 460 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 COMMD8Q9NX08 183 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 SCN3BQ9NY72 215 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 CAB39Q9Y376 341 aaPredicted RBP9.54□□□□□ -0.88
VCAN-210ENST00000513960 ZNF638Q14966 1978 aaKnown RBP9.54□□□□□ -0.88
VCAN-210ENST00000513960 TTC24A2A3L6 582 aaPredicted RBP9.54□□□□□ -0.88
VCAN-210ENST00000513960 ANGPTL1O95841 491 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 ITGB6P18564 788 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 TGFBR1P36897 503 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 ST13P50502 369 aaKnown RBP9.54□□□□□ -0.88
VCAN-210ENST00000513960 POU4F1Q01851 419 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 TRAF3Q13114 568 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 TUSC3Q13454 348 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 SKIV2LQ15477 1246 aaKnown RBP9.54□□□□□ -0.88
VCAN-210ENST00000513960 TRIM60Q495X7 471 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 MILR1Q7Z6M3 343 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 BLOC1S5Q8TDH9 187 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 TMEM209Q96SK2 561 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 ACOX2Q99424 681 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 ADAM2Q99965 735 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 TRMT13Q9NUP7 481 aaKnown RBP9.54□□□□□ -0.88
VCAN-210ENST00000513960 KIF17Q9P2E2 1029 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 TBC1D14Q9P2M4 693 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 RNF112Q9ULX5 631 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 INVSQ9Y283 1065 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 CCRL2O00421 344 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 TFECO14948 347 aaPredicted RBP9.54□□□□□ -0.88
VCAN-210ENST00000513960 KATNA1O75449 491 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 RECQL5O94762 991 aaPredicted RBP9.54□□□□□ -0.88
VCAN-210ENST00000513960 FSHRP23945 695 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 HTR7P34969 479 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 GGT5P36269 586 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 KCNAB2Q13303 367 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 TECRLQ5HYJ1 363 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 PAGE3Q5JUK9 113 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 C6orf141Q5SZD1 244 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 OR10T2Q8NGX3 314 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 PROX1Q92786 737 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 UPF1Q92900 1129 aaKnown RBP eCLIP9.54□□□□□ -0.88
VCAN-210ENST00000513960 CITED4Q96RK1 184 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 MOSPD1Q9UJG1 213 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 VWA7Q9Y334 891 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 SNX8Q9Y5X2 465 aa9.54□□□□□ -0.88
VCAN-210ENST00000513960 PCNTO95613 3336 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 MANSC4A6NHS7 340 aaPredicted RBP9.53□□□□□ -0.88
VCAN-210ENST00000513960 RGS5O15539 181 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 MAFKO60675 156 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 CNTN5O94779 1100 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 ZNF682O95780 498 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 RPLP2P05387 115 aaKnown RBP9.53□□□□□ -0.88
VCAN-210ENST00000513960 CYP4F2P78329 520 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 CYP4F3Q08477 520 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 ILF2Q12905 390 aaKnown RBP9.53□□□□□ -0.88
VCAN-210ENST00000513960 LCN8Q6JVE9 175 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 MRPL10Q7Z7H8 261 aaKnown RBP9.53□□□□□ -0.88
VCAN-210ENST00000513960 LRRTM3Q86VH5 581 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 ARHGAP12Q8IWW6 846 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 CDYL2Q8N8U2 506 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 FAR1Q8WVX9 515 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 TUBA1CQ9BQE3 449 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 NEK6Q9HC98 313 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 NT5MQ9NPB1 228 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 MPP6Q9NZW5 540 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 DNAJC15Q9Y5T4 150 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 UBFD1O14562 309 aaKnown RBP9.53□□□□□ -0.88
VCAN-210ENST00000513960 ZNF623O75123 536 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 GUCY1B2O75343 617 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 PGLSO95336 258 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 CYP11A1P05108 521 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 INHBBP09529 407 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 CDH1P12830 882 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 GPX3P22352 226 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 MZF1P28698 734 aaPredicted RBP9.53□□□□□ -0.88
VCAN-210ENST00000513960 IL12AP29459 219 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 POLD2P49005 469 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 TUFMP49411 452 aaKnown RBP9.53□□□□□ -0.88
VCAN-210ENST00000513960 ALDH3A2P51648 485 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 SH3BP2P78314 561 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 CD47Q08722 323 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 SELENBP1Q13228 472 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 DDX59Q5T1V6 619 aaKnown RBP eCLIP9.53□□□□□ -0.88
VCAN-210ENST00000513960 LRRC8DQ7L1W4 858 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 BEND5Q7L4P6 421 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 VASH1Q7L8A9 365 aaPredicted RBP9.53□□□□□ -0.88
VCAN-210ENST00000513960 SERINC5Q86VE9 423 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 PTCD2Q8WV60 388 aaKnown RBP9.53□□□□□ -0.88
VCAN-210ENST00000513960 NUDT8Q8WV74 236 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 RPL3LQ92901 407 aaKnown RBP9.53□□□□□ -0.88
VCAN-210ENST00000513960 BBS2Q9BXC9 721 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 AMBNQ9NP70 447 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 ERVK-18Q9QC07 812 aa9.53□□□□□ -0.88
VCAN-210ENST00000513960 LEF1Q9UJU2 399 aaPredicted RBP9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms