RNA–Protein interactions for RNA: ENST00000489862.1

DEPDC1-204, Transcript of DEP domain containing 1, humanhuman

TSL 1 (best)

Gene DEPDC1, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC1-204ENST00000489862 KATNB1Q9BVA0 655 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 NUP85Q9BW27 656 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 MOV10L1Q9BXT6 1211 aaKnown RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 OSBPL8Q9BZF1 889 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 ABCG8Q9H221 673 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 RANGRFQ9HD47 186 aaPredicted RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 MLXIPLQ9NP71 852 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 POT1Q9NUX5 634 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 DNAJC11Q9NVH1 559 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 SPASTQ9UBP0 616 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 UPB1Q9UBR1 384 aa3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 HOOK1Q9UJC3 728 aaKnown RBP3.19□□□□□ -1.9
DEPDC1-204ENST00000489862 PZPP20742 1482 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 HFM1A2PYH4 1435 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 STRCQ7RTU9 1775 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 SYCE3A1L190 88 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 CD8B2A6NJW9 211 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 EIF3CLB5ME19 914 aaKnown RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 NPIPB11E5RHQ5 1161 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 H3BNX3 289 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 UBXN8O00124 270 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 RRHO14718 337 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 CNOT3O75175 753 aaKnown RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 TOMM70O94826 608 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 SIX3O95343 332 aaPredicted RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 TRIM16O95361 564 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 PRAMEF12O95522 483 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 DIRAS3O95661 229 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 PSG1P11464 419 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 CYP4B1P13584 511 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 ADRA2CP18825 462 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 EPORP19235 508 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 CASTP20810 708 aaKnown RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 HSPA4P34932 840 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 ME1P48163 572 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 PCP4P48539 62 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 SULT1E1P49888 294 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 GNAQP50148 359 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 METAP1P53582 386 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 ASIC1P78348 528 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 RAE1P78406 368 aaKnown RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 ZBTB16Q05516 673 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 SRSF1Q07955 248 aaKnown RBP eCLIP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 CCDC15Q0P6D6 951 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 GRIK3Q13003 919 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 KARSQ15046 597 aaKnown RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 RNPS1Q15287 305 aaKnown RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 SGCBQ16585 318 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 TAZQ16635 292 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 GSTA3Q16772 222 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 GXYLT1Q4G148 440 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 TOR1AIP1Q5JTV8 583 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 C12orf60Q5U649 245 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 TMEM211Q6ICI0 200 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 ACSM6Q6P461 480 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 C16orf87Q6PH81 154 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 TMEM110Q86TL2 294 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 FAM160B2Q86V87 743 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 WDR5BQ86VZ2 330 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 TICAM1Q8IUC6 712 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 EGFL6Q8IUX8 553 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 FOXP4Q8IVH2 680 aaPredicted RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 P3H2Q8IVL5 708 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 CCDC13Q8IYE1 715 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 CPXM2Q8N436 756 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 EXD3Q8N9H8 876 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 ANKRD20A12PQ8NF67 263 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 URGCPQ8TCY9 931 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 LRRC8CQ8TDW0 803 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 WIPF2Q8TF74 440 aaPredicted RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 LPGAT1Q92604 370 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 BCL2L2Q92843 193 aaPredicted RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 FAR2Q96K12 515 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 RMDN2Q96LZ7 410 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 PARK7Q99497 189 aaKnown RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 NPAS1Q99742 590 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 ABHD6Q9BV23 337 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 TM2D2Q9BX73 214 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 NUF2Q9BZD4 464 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 XRN2Q9H0D6 950 aaKnown RBP eCLIP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 TMEM206Q9H813 350 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 CD93Q9NPY3 652 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 SLC35D1Q9NTN3 355 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 AATFQ9NY61 560 aaKnown RBP eCLIP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 AMACRQ9UHK6 382 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 HAO1Q9UJM8 370 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 SUFUQ9UMX1 484 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 SMC3Q9UQE7 1217 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 DTX4Q9Y2E6 619 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 ANGPTL3Q9Y5C1 460 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 HS3ST3B1Q9Y662 390 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 SQORQ9Y6N5 450 aa3.18□□□□□ -1.9
DEPDC1-204ENST00000489862 LMTK2Q8IWU2 1503 aa3.17□□□□□ -1.9
DEPDC1-204ENST00000489862 NOS1P29475 1434 aa3.17□□□□□ -1.9
DEPDC1-204ENST00000489862 ARHGAP31Q2M1Z3 1444 aa3.17□□□□□ -1.9
DEPDC1-204ENST00000489862 CNTLNQ9NXG0 1405 aa3.17□□□□□ -1.9
DEPDC1-204ENST00000489862 CEP152O94986 1710 aa3.17□□□□□ -1.9
DEPDC1-204ENST00000489862 NUP155O75694 1391 aa3.17□□□□□ -1.9
DEPDC1-204ENST00000489862 TTC3P53804 2025 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms