RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 PRSS21Q9Y6M0 314 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 RPS6KL1Q9Y6S9 549 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 FAM169AQ9Y6X4 670 aa6.9□□□□□ -1.3
LIMD1-204ENST00000474665 COL6A6A6NMZ7 2263 aa6.9□□□□□ -1.31
LIMD1-204ENST00000474665 NOTCH2Q04721 2471 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 LY6G6EA0A0G2JKS1 128 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 MAGEB16A2A368 324 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 TRIM38O00635 465 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 PCDHGA12O60330 932 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 CBFA2T3O75081 653 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 PIAS1O75925 651 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 USP1O94782 785 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 EML2O95834 649 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 PYGLP06737 847 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 SYPP08247 313 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 FAM153BP0C7A2 387 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 ZNF883P0CG24 379 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 ERVK-10P10266 1014 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 PGAM1P18669 254 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 ITGALP20701 1170 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 DGKAP23743 735 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 ACRV1P26436 265 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 GABRB3P28472 473 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 ARL4CP56559 192 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 GPX6P59796 221 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 PPARDQ03181 441 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 TMEM115Q12893 351 aaPredicted RBP6.89□□□□□ -1.31
LIMD1-204ENST00000474665 CALCOCO2Q13137 446 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 C1orf61Q13536 156 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 LAMB3Q13751 1172 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 PTK2BQ14289 1009 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 NAA30Q147X3 362 aaPredicted RBP6.89□□□□□ -1.31
LIMD1-204ENST00000474665 FAM153CQ494X1 144 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 GPR33Q49SQ1 333 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 DNAJC21Q5F1R6 531 aaKnown RBP6.89□□□□□ -1.31
LIMD1-204ENST00000474665 ZRANB3Q5FWF4 1079 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 DNTTIP2Q5QJE6 756 aaKnown RBP6.89□□□□□ -1.31
LIMD1-204ENST00000474665 NEPROQ6NW34 567 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 CASC4Q6P4E1 433 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 AFTPHQ6ULP2 937 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 IL27RAQ6UWB1 636 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 MARK2Q7KZI7 788 aaKnown RBP6.89□□□□□ -1.31
LIMD1-204ENST00000474665 RD3Q7Z3Z2 195 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 NAXDQ8IW45 347 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 DENND6AQ8IWF6 608 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 CLDN19Q8N6F1 224 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 BEND7Q8N7W2 519 aaPredicted RBP6.89□□□□□ -1.31
LIMD1-204ENST00000474665 BBOF1Q8ND07 529 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 FBXO36Q8NEA4 188 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 ZNF548Q8NEK5 533 aaPredicted RBP6.89□□□□□ -1.31
LIMD1-204ENST00000474665 GPR150Q8NGU9 434 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 OR6P1Q8NGX9 317 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 OR4L1Q8NH43 312 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 GPBAR1Q8TDU6 330 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 SGF29Q96ES7 293 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 CARS2Q9HA77 564 aaKnown RBP6.89□□□□□ -1.31
LIMD1-204ENST00000474665 SMYD2Q9NRG4 433 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 MOCS1Q9NZB8 636 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 MED16Q9Y2X0 877 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 U3KQA8 63 aa6.89□□□□□ -1.31
LIMD1-204ENST00000474665 CREBBPQ92793 2442 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 A6NCN8 305 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 OR2AG2A6NM03 316 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 LMO7DNF2Z398 122 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 YY2O15391 372 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 CD3EAPO15446 510 aaKnown RBP6.88□□□□□ -1.31
LIMD1-204ENST00000474665 RRP8O43159 456 aaKnown RBP6.88□□□□□ -1.31
LIMD1-204ENST00000474665 GRID2O43424 1007 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 MAGEC1O60732 1142 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 CDK14O94921 469 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 RASGRP1O95267 797 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 CER1O95813 267 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 S1PR4O95977 384 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 MYF5P13349 255 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 POU3F2P20265 443 aaPredicted RBP6.88□□□□□ -1.31
LIMD1-204ENST00000474665 AK4P27144 223 aaPredicted RBP6.88□□□□□ -1.31
LIMD1-204ENST00000474665 HTR1BP28222 390 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 SSTR1P30872 391 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 MAGEA4P43358 317 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 GNPDA1P46926 289 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 CCT8P50990 548 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 HNRNPKP61978 463 aaKnown RBP eCLIP6.88□□□□□ -1.31
LIMD1-204ENST00000474665 TIAL1Q01085 375 aaKnown RBP eCLIP6.88□□□□□ -1.31
LIMD1-204ENST00000474665 CTBSQ01459 385 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 CAV1Q03135 178 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 ITGA9Q13797 1035 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 FRG1Q14331 258 aaKnown RBP6.88□□□□□ -1.31
LIMD1-204ENST00000474665 TYSND1Q2T9J0 566 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 HSP90AA5PQ58FG0 334 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 PRRT3Q5FWE3 981 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 LDLRAP1Q5SW96 308 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 TEX35Q5T0J7 233 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 HIST2H2BCQ6DN03 193 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 ZNF549Q6P9A3 640 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 CRTC3Q6UUV7 619 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 PACS1Q6VY07 963 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 FAM83HQ6ZRV2 1179 aaPredicted RBP6.88□□□□□ -1.31
LIMD1-204ENST00000474665 DET1Q7L5Y6 550 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 TAS2R42Q7RTR8 314 aa6.88□□□□□ -1.31
LIMD1-204ENST00000474665 CILP2Q8IUL8 1156 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms