RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 MARCKSL1P49006 195 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 MC1RQ01726 317 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 TLE1Q04724 770 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 CDC20Q12834 499 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 MPP3Q13368 585 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 RPE65Q16518 533 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 SKIDA1Q1XH10 827 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 LDLRAP1Q5SW96 308 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 GPRC6AQ5T6X5 926 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 ZDHHC20Q5W0Z9 365 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 KATNAL2Q8IYT4 538 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 BEND7Q8N7W2 519 aaPredicted RBP13.02□□□□□ -0.33
CPSF4-210ENST00000469897 ZNF398Q8TD17 642 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 NAT14Q8WUY8 206 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 ABHD17AQ96GS6 310 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 VAT1Q99536 393 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.02□□□□□ -0.33
CPSF4-210ENST00000469897 HACD3Q9P035 362 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 EPHA6Q9UF33 1036 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 RSPH14Q9UHP6 348 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 TUBD1Q9UJT1 453 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 TRHDEQ9UKU6 1024 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 PKP3Q9Y446 797 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 PCDHA13Q9Y5I0 950 aa13.02□□□□□ -0.33
CPSF4-210ENST00000469897 SETXQ7Z333 2677 aaKnown RBP13.01□□□□□ -0.33
CPSF4-210ENST00000469897 CYSRT1A8MQ03 144 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 H7C0C1 242 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 GAPDHSO14556 408 aaPredicted RBP13.01□□□□□ -0.33
CPSF4-210ENST00000469897 FGF5P12034 268 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 NELFEP18615 380 aaKnown RBP13.01□□□□□ -0.33
CPSF4-210ENST00000469897 HLA-DPA1P20036 260 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 FECHP22830 423 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 CAPZBP47756 277 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 ATP5OP48047 213 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 HADHBP55084 474 aaKnown RBP13.01□□□□□ -0.33
CPSF4-210ENST00000469897 PPP1CAP62136 330 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 MAP7Q14244 749 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 ERV3-1Q14264 604 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 NFE2L1Q14494 772 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 KCNAB1Q14722 419 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 FNBP1LQ5T0N5 605 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 DET1Q7L5Y6 550 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 PRSS42Q7Z5A4 293 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 DDHD1Q8NEL9 900 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 KRT35Q92764 455 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 INSM2Q96T92 566 aaPredicted RBP13.01□□□□□ -0.33
CPSF4-210ENST00000469897 RAB33BQ9H082 229 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 CROTQ9UKG9 612 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 KCTD3Q9Y597 815 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 PCDHB3Q9Y5E6 796 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 ARL5AQ9Y689 179 aa13.01□□□□□ -0.33
CPSF4-210ENST00000469897 DNMT3AQ9Y6K1 912 aaPredicted RBP13.01□□□□□ -0.33
CPSF4-210ENST00000469897 IGHV5-51A0A0C4DH38 117 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 HACD1B0YJ81 288 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 STX7O15400 261 aaKnown RBP13□□□□□ -0.33
CPSF4-210ENST00000469897 TIAF1O95411 115 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 FURINP09958 794 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 CCNYL3P0C7X3 344 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 FOLR1P15328 257 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 MSH3P20585 1137 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 PBLDP30039 288 aaPredicted RBP13□□□□□ -0.33
CPSF4-210ENST00000469897 DMPKQ09013 629 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 OLIG2Q13516 323 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 ITGA9Q13797 1035 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 IGFBP7Q16270 282 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 METRNLQ641Q3 311 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 CERS6Q6ZMG9 384 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 BBS12Q6ZW61 710 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 PPP1R3BQ86XI6 285 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 TC2NQ8N9U0 490 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 GPR150Q8NGU9 434 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 C9orf43Q8TAL5 461 aaPredicted RBP13□□□□□ -0.33
CPSF4-210ENST00000469897 STAMBPL1Q96FJ0 436 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 RBM41Q96IZ5 413 aaKnown RBP13□□□□□ -0.33
CPSF4-210ENST00000469897 QKIQ96PU8 341 aaKnown RBP eCLIP13□□□□□ -0.33
CPSF4-210ENST00000469897 APOL2Q9BQE5 337 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 FICDQ9BVA6 458 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 FSD1LQ9BXM9 530 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 ZCCHC2Q9C0B9 1178 aaKnown RBP13□□□□□ -0.33
CPSF4-210ENST00000469897 IMP3Q9NV31 184 aaKnown RBP13□□□□□ -0.33
CPSF4-210ENST00000469897 LNPEPQ9UIQ6 1025 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 PADI1Q9ULC6 663 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13□□□□□ -0.33
CPSF4-210ENST00000469897 KCNMB2Q9Y691 235 aa13□□□□□ -0.33
CPSF4-210ENST00000469897 CFAP20Q9Y6A4 193 aaKnown RBP13□□□□□ -0.33
CPSF4-210ENST00000469897 LCA5LO95447 670 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 NTRK1P04629 796 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 LPOP22079 712 aaPredicted RBP12.99□□□□□ -0.33
CPSF4-210ENST00000469897 AKT1P31749 480 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 XRCC4Q13426 336 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 LONRF2Q1L5Z9 754 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.99□□□□□ -0.33
CPSF4-210ENST00000469897 CRTC2Q53ET0 693 aaPredicted RBP12.99□□□□□ -0.33
CPSF4-210ENST00000469897 COLEC12Q5KU26 742 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 CCDC181Q5TID7 509 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 PWWP2BQ6NUJ5 590 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 RANBP10Q6VN20 620 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 DAAM2Q86T65 1068 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 TMEM135Q86UB9 458 aa12.99□□□□□ -0.33
CPSF4-210ENST00000469897 SIDT2Q8NBJ9 832 aaKnown RBP12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms