RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 TSTA3Q13630 321 aaPredicted RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 ACOX1Q15067 660 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 ZNF77Q15935 545 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 GPR33Q49SQ1 333 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 TMEM215Q68D42 235 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 ADIPOR2Q86V24 386 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 FNDC5Q8NAU1 212 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 SPATS2LQ9NUQ6 558 aaKnown RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 NMRK1Q9NWW6 199 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 ARL15Q9NXU5 204 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 DPP7Q9UHL4 492 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 PCTPQ9UKL6 214 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 C5orf42Q9H799 3197 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 INPP4BO15327 924 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 STAMBPO95630 424 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 OR56A5P0C7T3 313 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 PBLDP30039 288 aaPredicted RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 MRPS22P82650 360 aaKnown RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 C9orf50Q5SZB4 431 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 RARS2Q5T160 578 aaKnown RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 WLSQ5T9L3 541 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 MILR1Q7Z6M3 343 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.47□□□□□ -0.25
CLK3-203ENST00000454830 MIER2Q8N344 545 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 CPSF7Q8N684 471 aaKnown RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 MAELQ96JY0 434 aaKnown RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 TUBGCP5Q96RT8 1024 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 FAM83DQ9H4H8 585 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 IPPKQ9H8X2 491 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 NUDT4Q9NZJ9 180 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 CIDEBQ9UHD4 219 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 GAPDHSO14556 408 aaPredicted RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 CAPN1P07384 714 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 CYP2A6P11509 494 aaPredicted RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 XRCC1P18887 633 aaPredicted RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 ETV3P41162 512 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 NR6A1Q15406 480 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 PHKG1Q16816 387 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 GRAMD1BQ3KR37 738 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 VPS26BQ4G0F5 336 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 LYPLAL1Q5VWZ2 237 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 CELF5Q8N6W0 485 aaKnown RBP13.47□□□□□ -0.25
CLK3-203ENST00000454830 LEMD2Q8NC56 503 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 PLEKHG4BQ96PX9 1271 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 HTATIP2Q9BUP3 242 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 SLC25A23Q9BV35 468 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 ZDHHC3Q9NYG2 299 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 POLG2Q9UHN1 485 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 ADAMTS6Q9UKP5 1117 aa13.47□□□□□ -0.25
CLK3-203ENST00000454830 SYNCRIPO60506 623 aaKnown RBP13.46□□□□□ -0.25
CLK3-203ENST00000454830 PFKLP17858 780 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 VCLP18206 1134 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 ADSLP30566 484 aaPredicted RBP13.46□□□□□ -0.25
CLK3-203ENST00000454830 DIO3P55073 304 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 GPRC6AQ5T6X5 926 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 REP15Q6BDI9 236 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 ZNF557Q8N988 423 aaPredicted RBP13.46□□□□□ -0.25
CLK3-203ENST00000454830 PHOSPHO2Q8TCD6 241 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 NAF1Q96HR8 494 aaKnown RBP13.46□□□□□ -0.25
CLK3-203ENST00000454830 PCDH12Q9NPG4 1184 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 OPTCQ9UBM4 332 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 ZNHIT2Q9UHR6 403 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 LTBP2Q14767 1821 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 PLXNA4Q9HCM2 1894 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 CDH23Q9H251 3354 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 CFAP99D6REC4 459 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 ESRRBO95718 433 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 ADH1CP00326 375 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 RPS17P08708 135 aaKnown RBP13.46□□□□□ -0.25
CLK3-203ENST00000454830 ALDOCP09972 364 aaKnown RBP13.46□□□□□ -0.25
CLK3-203ENST00000454830 GNAZP19086 355 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 ME2P23368 584 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 GTF2H2Q13888 395 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 TRIP10Q15642 601 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 ZNF284Q2VY69 593 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 GTF2H2CQ6P1K8 395 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 LARP4Q71RC2 724 aaKnown RBP eCLIP13.46□□□□□ -0.25
CLK3-203ENST00000454830 IFNEQ86WN2 208 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 PGAM4Q8N0Y7 254 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 BEND7Q8N7W2 519 aaPredicted RBP13.46□□□□□ -0.25
CLK3-203ENST00000454830 ISG20Q96AZ6 181 aaKnown RBP13.46□□□□□ -0.25
CLK3-203ENST00000454830 MTFMTQ96DP5 389 aaKnown RBP13.46□□□□□ -0.25
CLK3-203ENST00000454830 ZNF641Q96N77 438 aaPredicted RBP13.46□□□□□ -0.25
CLK3-203ENST00000454830 SUN2Q9UH99 717 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 ITM2BQ9Y287 266 aa13.46□□□□□ -0.25
CLK3-203ENST00000454830 STX16O14662 325 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 NRP2O60462 931 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 FKBP6O75344 327 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 HIST1H2AGP0C0S8 130 aaPredicted RBP13.46□□□□□ -0.26
CLK3-203ENST00000454830 MSH3P20585 1137 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 HIST1H2ADP20671 130 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 NFKBIAP25963 317 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 UBE3AQ05086 875 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 ELMO1Q92556 727 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 HIST1H2AHQ96KK5 128 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 HIST1H2AJQ99878 128 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 H2AFJQ9BTM1 129 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 RIOK2Q9BVS4 552 aaKnown RBP13.46□□□□□ -0.26
CLK3-203ENST00000454830 TUBB1Q9H4B7 451 aa13.46□□□□□ -0.26
CLK3-203ENST00000454830 TULP3O75386 442 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms