RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PWP1Q13610 501 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 FAM91A1Q658Y4 838 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 ZCCHC8Q6NZY4 707 aaKnown RBP11.82□□□□□ -0.52
HMGB1-206ENST00000405805 KRT73Q86Y46 540 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 LZTR1Q8N653 840 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 TOP6BLQ8N6T0 577 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 LRRC58Q96CX6 371 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 SMURF2Q9HAU4 748 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 SCN3BQ9NY72 215 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 USP22Q9UPT9 525 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 PCDHGA7Q9Y5G6 932 aa11.82□□□□□ -0.52
HMGB1-206ENST00000405805 A0A1W2PRG6 482 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 FAM47E-STBD1D6RA91 191 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 F5H5T6 163 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 CYP7B1O75881 506 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 FCGR1AP12314 374 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 APLP1P51693 650 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 AKIRIN2Q53H80 203 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 OR56A4Q8NGH8 313 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 VMP1Q96GC9 406 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 TSSK3Q96PN8 268 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 EMILIN2Q9BXX0 1053 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 POLR1EQ9GZS1 481 aaKnown RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 NEK6Q9HC98 313 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 ATP13A1Q9HD20 1204 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 TMX2-CTNND1H3BSU7 103 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 DENRO43583 198 aaKnown RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 KPNA6O60684 536 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 NIPSNAP2O75323 286 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 GSRP00390 522 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 OXTRP30559 389 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 GPR15P49685 360 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 GSTM4Q03013 218 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 ZNF792Q3KQV3 632 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 MFSD14CQ5VZR4 134 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 FAM45BPQ6NSW5 357 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 LUZP2Q86TE4 346 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 GALNT12Q8IXK2 581 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 FIBCD1Q8N539 461 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 TOR1AIP2Q8NFQ8 470 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 FAM45AQ8TCE6 357 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 ISOC1Q96CN7 298 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 SMIM14Q96QK8 99 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 SMAD5Q99717 465 aaKnown RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 FEM1AQ9BSK4 669 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 VRTNQ9H8Y1 702 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 SP140LQ9H930 580 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 MOV10Q9HCE1 1003 aaKnown RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 IFT80Q9P2H3 777 aaPredicted RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 CRLS1Q9UJA2 301 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 LEF1Q9UJU2 399 aaPredicted RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 CDH9Q9ULB4 789 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 LRFN2Q9ULH4 789 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 NUP214P35658 2090 aaPredicted RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 C12orf71A8MTZ7 269 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 NPHS1O60500 1241 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 DIRAS1O95057 198 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 CDH1P12830 882 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 IL2P60568 153 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 MAP2K5Q13163 448 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 HNRNPDQ14103 355 aaKnown RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 SF3B4Q15427 424 aaKnown RBP eCLIP11.81□□□□□ -0.521e-8■■■□□ 19.1
HMGB1-206ENST00000405805 MAPKAPK3Q16644 382 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 FAM214AQ32MH5 1076 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 BROXQ5VW32 411 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 DUS1LQ6P1R4 473 aaKnown RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 EFL1Q7Z2Z2 1120 aaKnown RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 SNX29P2Q8IUI4 249 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 ZC3H7AQ8IWR0 971 aaKnown RBP11.81□□□□□ -0.52
HMGB1-206ENST00000405805 MUS81Q96NY9 551 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 SCUBE2Q9NQ36 999 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 ADGRE2Q9UHX3 823 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.81□□□□□ -0.524e-6■■■□□ 17.3
HMGB1-206ENST00000405805 ERVK-11Q9UQG0 969 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 ACTL7AQ9Y615 435 aa11.81□□□□□ -0.52
HMGB1-206ENST00000405805 DNAJC25-GNG10A0A024R161 153 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 PRR23D1E9PI22 279 aaPredicted RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 ACSL4O60488 711 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 GJB3O75712 270 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 PRR23D2P0DMB1 279 aaPredicted RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 HAPLN1P10915 354 aaPredicted RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 MAGEA3P43357 314 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 POLR2JP52435 117 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 CDKN2DP55273 166 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 HMGCS1Q01581 520 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 GALNT2Q10471 571 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 ACAP2Q15057 778 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 AARS2Q5JTZ9 985 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 FAM171A1Q5VUB5 890 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 GPRIN3Q6ZVF9 776 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 LSMEM2Q8N112 164 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 ENKURQ8TC29 256 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 UTP15Q8TED0 518 aaKnown RBP11.8□□□□□ -0.52
HMGB1-206ENST00000405805 NUDT8Q8WV74 236 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 OTULINQ96BN8 352 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 TRIM62Q9BVG3 475 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 NUAK2Q9H093 628 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 GMIPQ9P107 970 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 LRRC37AA6NMS7 1700 aa11.8□□□□□ -0.52
HMGB1-206ENST00000405805 MYO7AQ13402 2215 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms