RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 SCRN2Q96FV2 425 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 SMIM14Q96QK8 99 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 PSKH2Q96QS6 385 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 NUDT9Q9BW91 350 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 UNKQ9C0B0 810 aaKnown RBP11.02□□□□□ -0.64
RTN3-204ENST00000354497 NAT10Q9H0A0 1025 aaKnown RBP11.02□□□□□ -0.64
RTN3-204ENST00000354497 VPS16Q9H269 839 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 NDST4Q9H3R1 872 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 CLSTN2Q9H4D0 955 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 AKIRIN1Q9H9L7 192 aaPredicted RBP11.02□□□□□ -0.64
RTN3-204ENST00000354497 NOD2Q9HC29 1040 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 MLXIPLQ9NP71 852 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 SEPT11Q9NVA2 429 aaKnown RBP11.02□□□□□ -0.64
RTN3-204ENST00000354497 ASF1BQ9NVP2 202 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 NOCTQ9UK39 431 aaKnown RBP11.02□□□□□ -0.64
RTN3-204ENST00000354497 RARRES3Q9UL19 164 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 AP4E1Q9UPM8 1137 aa11.02□□□□□ -0.64
RTN3-204ENST00000354497 ESPL1Q14674 2120 aa11.02□□□□□ -0.65
RTN3-204ENST00000354497 SHANK1Q9Y566 2161 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 OR5K4A6NMS3 321 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 SMAPO00193 183 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 GPR37O15354 613 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 MGRN1O60291 552 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 DNAJC6O75061 913 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 CBX6O95503 412 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 PYGLP06737 847 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 UCHL3P15374 230 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 ERCC2P18074 760 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 HTR7P34969 479 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 ZNF143P52747 638 aaPredicted RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 AIF1P55008 147 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 MAXP61244 160 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 KCNAB1Q14722 419 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 KYNUQ16719 465 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 CA9Q16790 459 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 PLA2G4EQ3MJ16 856 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 VWA3BQ502W6 1294 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 PAPD7Q5XG87 772 aaKnown RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 PWWP2BQ6NUJ5 590 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 TMEM26Q6ZUK4 368 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 TRIM42Q8IWZ5 723 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 NDUFAF2Q8N183 169 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 BBS5Q8N3I7 341 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 NPWQ8N729 165 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 RBMXL3Q8N7X1 1067 aaKnown RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 SIDT2Q8NBJ9 832 aaKnown RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 RSC1A1Q92681 617 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 MR1Q95460 341 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 SNRNP40Q96DI7 357 aaKnown RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 COX14Q96I36 57 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 NUDCD1Q96RS6 583 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 CARD6Q9BX69 1037 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 GPR87Q9BY21 358 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 FARSAQ9Y285 508 aaKnown RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 PCDHGB7Q9Y5F8 929 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 SLC30A1Q9Y6M5 507 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 CAPN7Q9Y6W3 813 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 CRYBG3Q68DQ2 2970 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 PDZK1P1A8MUH7 402 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 GOLGA6L19H0YKK7 550 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 TOX3O15405 576 aaPredicted RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 GRID2O43424 1007 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 PGLSO95336 258 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 CALB1P05937 261 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 CHRNB2P17787 502 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 ARL4DP49703 201 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 EPHB1P54762 984 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 UBE2IP63279 158 aaKnown RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 ITKQ08881 620 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 PTP4A2Q12974 167 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 DYNC1I2Q13409 638 aaKnown RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 RIPK1Q13546 671 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 TSNAXIP1Q2TAA8 658 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 PPP6R3Q5H9R7 873 aaPredicted RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 DPY19L2P1Q6NXN4 242 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 DCUN1D2Q6PH85 259 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 RFX8Q6ZV50 586 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 PRSS42Q7Z5A4 293 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 MCEMP1Q8IX19 187 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 ELOA2Q8IYF1 753 aaPredicted RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 PGBD5Q8N414 524 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP11.01□□□□□ -0.65
RTN3-204ENST00000354497 B4GALNT2Q8NHY0 566 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 WNT2BQ93097 391 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 SPDL1Q96EA4 605 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 ZDHHC12Q96GR4 267 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 MCCC1Q96RQ3 725 aaPredicted RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 KCTD15Q96SI1 283 aaPredicted RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 NAA15Q9BXJ9 866 aaKnown RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 STK33Q9BYT3 514 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 GPR83Q9NYM4 423 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 SCHIP1Q9P0W5 487 aaPredicted RBP11.01□□□□□ -0.65
RTN3-204ENST00000354497 PCSK1NQ9UHG2 260 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 WDR37Q9Y2I8 494 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 SIK3Q9Y2K2 1263 aa11.01□□□□□ -0.65
RTN3-204ENST00000354497 DOPEY1Q5JWR5 2465 aa11□□□□□ -0.65
RTN3-204ENST00000354497 MED13Q9UHV7 2174 aa11□□□□□ -0.65
RTN3-204ENST00000354497 SIGLEC16A6NMB1 481 aa11□□□□□ -0.65
RTN3-204ENST00000354497 EIF3HO15372 352 aaKnown RBP eCLIP11□□□□□ -0.65
RTN3-204ENST00000354497 SMNDC1O75940 238 aaKnown RBP eCLIP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms