RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SAMD11Q96NU1 681 aa14.73□□□□□ -0.05
COL17A1-201ENST00000353479 CEP44Q9C0F1 390 aa14.73□□□□□ -0.05
COL17A1-201ENST00000353479 SSU72Q9NP77 194 aaKnown RBP14.73□□□□□ -0.05
COL17A1-201ENST00000353479 ENTPD5O75356 428 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 SERPINB7O75635 380 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 SERINC3Q13530 473 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 NDUFA9Q16795 377 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 ISLR2Q6UXK2 745 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 EPHX4Q8IUS5 362 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 PPM1MQ96MI6 270 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 SEMA3GQ9NS98 782 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 MAT2BQ9NZL9 334 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 CYTH4Q9UIA0 394 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 TMEM59LQ9UK28 342 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 LYVE1Q9Y5Y7 322 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 FAM72CH0Y354 149 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 HIST1H2ABP04908 130 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 PSMA3P25788 255 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 MSX2P35548 267 aaPredicted RBP14.72□□□□□ -0.05
COL17A1-201ENST00000353479 INO80DQ53TQ3 878 aaPredicted RBP14.72□□□□□ -0.05
COL17A1-201ENST00000353479 FAM72AQ5TYM5 149 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 FAM72DQ6L9T8 149 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 EIF3MQ7L2H7 374 aaKnown RBP14.72□□□□□ -0.05
COL17A1-201ENST00000353479 HIST3H2AQ7L7L0 130 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 FAM72BQ86X60 149 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 ULK2Q8IYT8 1036 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 ZCCHC10Q8TBK6 192 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 IRF7Q92985 503 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 HIST1H2ACQ93077 130 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 RTKNQ9BST9 563 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 POLR1BQ9H9Y6 1135 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 BBIP1A8MTZ0 92 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 UPK3BL1B0FP48 263 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 C9JVG2 144 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 UPK3BL2E5RIL1 263 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 MMP20O60882 483 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 HOXB2P14652 356 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 ITGA2P17301 1181 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 PPIBP23284 216 aaKnown RBP14.72□□□□□ -0.05
COL17A1-201ENST00000353479 OFCC1Q8IZS5 231 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 SRFBP1Q8NEF9 429 aaKnown RBP14.72□□□□□ -0.05
COL17A1-201ENST00000353479 ZNF514Q96K75 400 aaPredicted RBP14.72□□□□□ -0.05
COL17A1-201ENST00000353479 ZNF607Q96SK3 696 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 CCDC28BQ9BUN5 200 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 EBPLQ9BY08 206 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 SLC9A8Q9Y2E8 581 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 MBLAC1A4D2B0 266 aaPredicted RBP14.72□□□□□ -0.05
COL17A1-201ENST00000353479 C2orf78A6NCI8 922 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 KRT8P05787 483 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 SOX6P35712 828 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 ASMTP46597 345 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 BLKP51451 505 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 DEF8Q6ZN54 512 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 YTHDF3Q7Z739 585 aaKnown RBP14.72□□□□□ -0.05
COL17A1-201ENST00000353479 PHF10Q8WUB8 498 aaKnown RBP14.72□□□□□ -0.05
COL17A1-201ENST00000353479 ZSCAN5AQ9BUG6 496 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 DZANK1Q9NVP4 752 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 KCTD3Q9Y597 815 aa14.72□□□□□ -0.05
COL17A1-201ENST00000353479 CXorf49A8MYA2 514 aaPredicted RBP14.71□□□□□ -0.05
COL17A1-201ENST00000353479 ZIK1Q3SY52 487 aaPredicted RBP14.71□□□□□ -0.05
COL17A1-201ENST00000353479 VPS26BQ4G0F5 336 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 TBC1D23Q9NUY8 699 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 ZNF358Q9NW07 568 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 N6AMT1Q9Y5N5 214 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 CST1P01037 141 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 GKP32189 559 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 MAPK12P53778 367 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 LRRC66Q68CR7 880 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 ZNF776Q68DI1 518 aaPredicted RBP14.71□□□□□ -0.05
COL17A1-201ENST00000353479 FBXW2Q9UKT8 454 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 PIP5K1BO14986 540 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 KRT36O76013 467 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 TIMP1P01033 207 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 SLC35G6P0C7Q6 338 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 CCNYL3P0C7X3 344 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 KHDRBS1Q07666 443 aaKnown RBP eCLIP14.71□□□□□ -0.05
COL17A1-201ENST00000353479 OR2T12Q8NG77 320 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 KBTBD7Q8WVZ9 684 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 TLCD1Q96CP7 247 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 SLC2A13Q96QE2 648 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 EPB41L4BQ9H329 900 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 EXO5Q9H790 373 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 SIRPGQ9P1W8 387 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 TPRKBQ9Y3C4 175 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 LTBP4Q8N2S1 1624 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 AP3D1O14617 1153 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 PDE9AO76083 593 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 AQP1P29972 269 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 FAAH2Q6GMR7 532 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 SLC43A3Q8NBI5 491 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 C1orf74Q96LT6 269 aa14.71□□□□□ -0.05
COL17A1-201ENST00000353479 ENO4A6NNW6 628 aa14.71□□□□□ -0.06
COL17A1-201ENST00000353479 SPIBQ01892 262 aa14.71□□□□□ -0.06
COL17A1-201ENST00000353479 NEDD8Q15843 81 aa14.71□□□□□ -0.06
COL17A1-201ENST00000353479 CLLU1OSQ5K130 101 aa14.71□□□□□ -0.06
COL17A1-201ENST00000353479 EPS8L2Q9H6S3 715 aa14.71□□□□□ -0.06
COL17A1-201ENST00000353479 RNPEPL1Q9HAU8 725 aa14.71□□□□□ -0.06
COL17A1-201ENST00000353479 LZTS1Q9Y250 596 aa14.71□□□□□ -0.06
COL17A1-201ENST00000353479 SUV39H1O43463 412 aa14.7□□□□□ -0.06
COL17A1-201ENST00000353479 MYL12AP19105 171 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms