RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 XRRA1Q6P2D8 792 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 B3GNT8Q7Z7M8 397 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 CCNYQ8ND76 341 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 RPL3LQ92901 407 aaKnown RBP18.32■□□□□ 0.52
SMPD1-201ENST00000342245 CDADC1Q9BWV3 514 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 ZBTB20Q9HC78 741 aaPredicted RBP18.32■□□□□ 0.52
SMPD1-201ENST00000342245 TRMT13Q9NUP7 481 aaKnown RBP18.32■□□□□ 0.52
SMPD1-201ENST00000342245 MAGED1Q9Y5V3 778 aaPredicted RBP18.32■□□□□ 0.52
SMPD1-201ENST00000342245 MFSD11O43934 449 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 HS6ST1O60243 411 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 CSNK2BP67870 215 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 NOL9Q5SY16 702 aaKnown RBP18.32■□□□□ 0.52
SMPD1-201ENST00000342245 CLEC6AQ6EIG7 209 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 GALNT11Q8NCW6 608 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 LRRC20Q8TCA0 184 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 PIWIL1Q96J94 861 aaKnown RBP18.32■□□□□ 0.52
SMPD1-201ENST00000342245 C3orf30Q96M34 536 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 NIPAL2Q9H841 368 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 CYP4F12Q9HCS2 524 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 ITM2CQ9NQX7 267 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 IGSF5Q9NSI5 407 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 FAM198AQ9UFP1 575 aa18.32■□□□□ 0.52
SMPD1-201ENST00000342245 NEMP2A6NFY4 417 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 PLK4O00444 970 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 NOBOXO60393 691 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 OR7A10O76100 309 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 FADS2O95864 444 aaKnown RBP18.31■□□□□ 0.52
SMPD1-201ENST00000342245 BDNFP23560 247 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 FMO4P31512 558 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 SOX6P35712 828 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 ARL2P36404 184 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 CTSKP43235 329 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 HCAR3P49019 387 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 TNK1Q13470 666 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 FUT11Q495W5 492 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 CERCAMQ5T4B2 595 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 PXDC1Q5TGL8 231 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 CCDC190Q86UF4 302 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 HIPK1Q86Z02 1210 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 HID1Q8IV36 788 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 CNIH3Q8TBE1 160 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 PDLIM5Q96HC4 596 aaKnown RBP18.31■□□□□ 0.52
SMPD1-201ENST00000342245 TMEM80Q96HE8 168 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 CPSF3Q9UKF6 684 aaKnown RBP18.31■□□□□ 0.52
SMPD1-201ENST00000342245 HCN4Q9Y3Q4 1203 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 LEUTXA8MZ59 168 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 NFIBO00712 420 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 SLC9A3R1O14745 358 aaPredicted RBP18.31■□□□□ 0.52
SMPD1-201ENST00000342245 PSMD3O43242 534 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 TRIM3O75382 744 aaPredicted RBP18.31■□□□□ 0.52
SMPD1-201ENST00000342245 NMBRP28336 390 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 CDH8P55286 799 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 HUNKP57058 714 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 FAPQ12884 760 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 SWSAP1Q6NVH7 229 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 NRARPQ7Z6K4 114 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 CDAN1Q8IWY9 1227 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 ZNF540Q8NDQ6 660 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 EIF3KQ9UBQ5 218 aaKnown RBP18.31■□□□□ 0.52
SMPD1-201ENST00000342245 TRMT6Q9UJA5 497 aaKnown RBP18.31■□□□□ 0.52
SMPD1-201ENST00000342245 CDH9Q9ULB4 789 aa18.31■□□□□ 0.52
SMPD1-201ENST00000342245 SERPINF2P08697 491 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 HOXC6P09630 235 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 LTA4HP09960 611 aaKnown RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 DBTP11182 482 aaKnown RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 NPR1P16066 1061 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 GOT1P17174 413 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 CYP2B6P20813 491 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 CFL1P23528 166 aaKnown RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 CDH13P55290 713 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 CDH17Q12864 832 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 MTERF2Q49AM1 385 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 TOR2AQ5JU69 321 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 LETMD1Q6P1Q0 360 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 DPY19L3Q6ZPD9 716 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 PDZD4Q76G19 769 aaPredicted RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 PHYKPLQ8IUZ5 450 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 ANKRD31Q8N7Z5 1873 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 OR10T2Q8NGX3 314 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 SYTL5Q8TDW5 730 aaPredicted RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 RPL10LQ96L21 214 aaKnown RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 CCDC115Q96NT0 180 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 C11orf84Q9BUA3 381 aaPredicted RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 MRPL4Q9BYD3 311 aaKnown RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 GORASP2Q9H8Y8 452 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 TIGARQ9NQ88 270 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 ATPIF1Q9UII2 106 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 KLHL21Q9UJP4 597 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 SNX6Q9UNH7 406 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 RNF6Q9Y252 685 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 RIPK3Q9Y572 518 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 MYO18AQ92614 2054 aaKnown RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 A8MV72 311 aaPredicted RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 CPNE3O75131 537 aaKnown RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 MT-CO1P00395 513 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 RPLP0P05388 317 aaKnown RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 GGT1P19440 569 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 POU6F2P78424 691 aaPredicted RBP18.3■□□□□ 0.52
SMPD1-201ENST00000342245 ORC1Q13415 861 aa18.3■□□□□ 0.52
SMPD1-201ENST00000342245 ZNF460Q14592 562 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms