RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 IRF3Q14653 427 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 POU4F3Q15319 338 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 LTB4RQ15722 352 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 UGCGQ16739 394 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 SAMD4BQ5PRF9 694 aaKnown RBP11.73□□□□□ -0.53
SHMT2-201ENST00000328923 UNC5DQ6UXZ4 953 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 DBX2Q6ZNG2 339 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 CAMKK1Q8N5S9 505 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 BSNDQ8WZ55 320 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 RORBQ92753 470 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 LPPQ93052 612 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 PTERQ96BW5 349 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 CDCA5Q96FF9 252 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 RPRD1AQ96P16 312 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-201ENST00000328923 CPXM1Q96SM3 734 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 CGRRF1Q99675 332 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 EBNA1BP2Q99848 306 aaKnown RBP11.73□□□□□ -0.53
SHMT2-201ENST00000328923 FAM49AQ9H0Q0 323 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-201ENST00000328923 ANKHQ9HCJ1 492 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 ERVK13-1Q9NX77 482 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 PCDHA11Q9Y5I1 949 aa11.73□□□□□ -0.53
SHMT2-201ENST00000328923 BTN3A1O00481 513 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 GRID2O43424 1007 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 ICAM1P05362 532 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 GLAP06280 429 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 KRT19P08727 400 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 PSMB9P28065 219 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 SLC15A1P46059 708 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 SP2Q02086 613 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 RGS1Q08116 209 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 ABRQ12979 859 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 INPP5AQ14642 412 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 SMAD1Q15797 465 aaKnown RBP11.72□□□□□ -0.53
SHMT2-201ENST00000328923 TKFCQ3LXA3 575 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 Q3ZCU0 254 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 SETMARQ53H47 684 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-201ENST00000328923 VARS2Q5ST30 1063 aaKnown RBP11.72□□□□□ -0.53
SHMT2-201ENST00000328923 LAIR2Q6ISS4 152 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 CASC4Q6P4E1 433 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 GPAT4Q86UL3 456 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 LIX1LQ8IVB5 337 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 P3H2Q8IVL5 708 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 C8orf59Q8N0T1 100 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-201ENST00000328923 RDM1Q8NG50 284 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 UBASH3BQ8TF42 649 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 SGK3Q96BR1 496 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 ZNF668Q96K58 619 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-201ENST00000328923 ZNF416Q9BWM5 594 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 CDYLQ9Y232 598 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 KLHL20Q9Y2M5 609 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 PTPRJQ12913 1337 aa11.72□□□□□ -0.53
SHMT2-201ENST00000328923 WDR64B1ANS9 1081 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 H0Y626 953 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 USP2O75604 605 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-201ENST00000328923 SOAT2O75908 522 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 ARSAP15289 507 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 TPSB2P20231 275 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 MAOBP27338 520 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 GNPDA1P46926 289 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 GABARAPL2P60520 117 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 PCDH1Q08174 1060 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 DGKZQ13574 1117 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 TPSAB1Q15661 275 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 SGCAQ16586 387 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 NBPF12Q5TAG4 269 aaPredicted RBP11.71□□□□□ -0.53
SHMT2-201ENST00000328923 FAM160B1Q5W0V3 765 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 STEAP4Q687X5 459 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 DENND5AQ6IQ26 1287 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 CES5AQ6NT32 575 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 METTL23Q86XA0 190 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 TRIM48Q8IWZ4 208 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 UNC5BQ8IZJ1 945 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 KLHL6Q8WZ60 621 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 PTP4A1Q93096 173 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 FAM84AQ96KN4 292 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 TNIP3Q96KP6 325 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 SIGLEC10Q96LC7 697 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 MYRFLQ96LU7 910 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 OR2A14Q96R47 310 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 TMEM168Q9H0V1 697 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 EXD2Q9NVH0 621 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 MAPRE3Q9UPY8 281 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 SLC12A8A0AV02 714 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 TMEM150BA6NC51 233 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 CCDC182A6NF36 153 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 EFCAB9A8MZ26 197 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 MUSKO15146 869 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 TNFRSF21O75509 655 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 DNTTP04053 509 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 CAPZA2P47755 286 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 MAPKAPK2P49137 400 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 CPT1AP50416 773 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 PRKCDQ05655 676 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 DSC1Q08554 894 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 EML3Q32P44 896 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 PTCHD3Q3KNS1 767 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 IQCCQ4KMZ1 466 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 ALKBH2Q6NS38 261 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 GPAT2Q6NUI2 795 aa11.71□□□□□ -0.53
SHMT2-201ENST00000328923 LRFN4Q6PJG9 635 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms