RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ITGA1P56199 1179 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 TYSND1Q2T9J0 566 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 SYPL2Q5VXT5 272 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 ATP13A1Q9HD20 1204 aa15.21■□□□□ 0.03
SHH-201ENST00000297261 E7ESA3 106 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 HAT1O14929 419 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 PORP16435 677 aaPredicted RBP15.21■□□□□ 0.02
SHH-201ENST00000297261 L1CAMP32004 1257 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 ZNF135P52742 658 aaPredicted RBP15.21■□□□□ 0.02
SHH-201ENST00000297261 PGGT1BP53609 377 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 CDK18Q07002 472 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 OGFRL1Q5TC84 451 aaPredicted RBP15.21■□□□□ 0.02
SHH-201ENST00000297261 NEK5Q6P3R8 708 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 FAM131AQ6UXB0 335 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 NEK10Q6ZWH5 1172 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 GBA3Q9H227 469 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 AP3M1Q9Y2T2 418 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 SNX10Q9Y5X0 201 aa15.21■□□□□ 0.02
SHH-201ENST00000297261 FAM240BA0A1B0GVZ2 78 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 CCDC162PA2VCL2 907 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 LRIG2O94898 1065 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 C4BPBP20851 252 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 CLCQ05315 142 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 GALNT3Q14435 633 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 SERINC5Q86VE9 423 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 CYP4Z1Q86W10 505 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 TOP1MTQ969P6 601 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 LINGO1Q96FE5 620 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 ZNF696Q9H7X3 374 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 SP140LQ9H930 580 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 PTBP2Q9UKA9 531 aaKnown RBP15.2■□□□□ 0.02
SHH-201ENST00000297261 CCRL2O00421 344 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 DENRO43583 198 aaKnown RBP15.2■□□□□ 0.02
SHH-201ENST00000297261 CKMP06732 381 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 CHRNA4P43681 627 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 RAB39AQ14964 217 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 HIST2H2ACQ16777 129 aaPredicted RBP15.2■□□□□ 0.02
SHH-201ENST00000297261 HIST2H2AA3Q6FI13 130 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 FAM126AQ9BYI3 521 aaPredicted RBP15.2■□□□□ 0.02
SHH-201ENST00000297261 MIEF1Q9NQG6 463 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 RCOR3Q9P2K3 495 aaPredicted RBP15.2■□□□□ 0.02
SHH-201ENST00000297261 GSTK1Q9Y2Q3 226 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 MYO18AQ92614 2054 aaKnown RBP15.2■□□□□ 0.02
SHH-201ENST00000297261 TRIM64CA6NLI5 447 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 H3BNH8 94 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 FAM189A1O60320 539 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 EPB42P16452 691 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 ALDH9A1P49189 494 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 IST1P53990 364 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 FCHO2Q0JRZ9 810 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 MED8Q96G25 268 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 NARS2Q96I59 477 aaKnown RBP15.2■□□□□ 0.02
SHH-201ENST00000297261 FCRL2Q96LA5 508 aaPredicted RBP15.2■□□□□ 0.02
SHH-201ENST00000297261 PRRG3Q9BZD7 231 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 TRIM8Q9BZR9 551 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 TMED5Q9Y3A6 229 aa15.2■□□□□ 0.02
SHH-201ENST00000297261 EFCAB9A8MZ26 197 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 PSIP1O75475 530 aaKnown RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 CYBAP13498 195 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 CD36P16671 472 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 CTSKP43235 329 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 MAGEA10P43363 369 aaPredicted RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 GSK3BP49841 420 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 EIF3MQ7L2H7 374 aaKnown RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 SLC34A3Q8N130 599 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 MOV10Q9HCE1 1003 aaKnown RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 ITM2CQ9NQX7 267 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 POLE4Q9NR33 117 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 RNF186Q9NXI6 227 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 GIMAP2Q9UG22 337 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 ZNF222Q9UK12 451 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 A0A1W2PQH9 124 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 NOTOA8MTQ0 251 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 UGT2B11O75310 529 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 LRG1P02750 347 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 CYBBP04839 570 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 COL6A1P12109 1028 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 CYP2C18P33260 490 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 FEN1P39748 380 aaKnown RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 ABATP80404 500 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 CRY1Q16526 586 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 RABL3Q5HYI8 236 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 RAP1GAP2Q684P5 730 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 SPATA19Q7Z5L4 167 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 FGD2Q7Z6J4 655 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 CTU1Q7Z7A3 348 aaKnown RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 KBTBD6Q86V97 674 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 OR4L1Q8NH43 312 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 LRRC58Q96CX6 371 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 PEBP4Q96S96 227 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 HERC2P3Q9BVR0 1158 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 TDRD1Q9BXT4 1180 aaKnown RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 AKTIPQ9H8T0 292 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 KCNK13Q9HB14 408 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 USP29Q9HBJ7 922 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 FOCADQ5VW36 1801 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 CHRM5P08912 532 aaPredicted RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 DDX5P17844 614 aaKnown RBP15.19■□□□□ 0.02
SHH-201ENST00000297261 ATP6V0D1P61421 351 aa15.19■□□□□ 0.02
SHH-201ENST00000297261 HSPA14Q0VDF9 509 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms