RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 MACROD2A1Z1Q3 448 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 CCNYL3P0C7X3 344 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 HLA-DPA1P20036 260 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 F8A1P23610 371 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 ARL4DP49703 201 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 CTSCP53634 463 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 PPP1CAP62136 330 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 XRCC4Q13426 336 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 TUBB3Q13509 450 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 ERV3-1Q14264 604 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 NFE2L1Q14494 772 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 IL11RAQ14626 422 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 SLC1A5Q15758 541 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 CHRNA6Q15825 494 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 TFDP3Q5H9I0 405 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 KLHL35Q6PF15 583 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 DET1Q7L5Y6 550 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 ZNF567Q8N184 647 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 SIDT2Q8NBJ9 832 aaKnown RBP12.51□□□□□ -0.41
CD44-203ENST00000278386 DDHD1Q8NEL9 900 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 ABHD17AQ96GS6 310 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 OXNAD1Q96HP4 312 aaPredicted RBP12.51□□□□□ -0.41
CD44-203ENST00000278386 RBM41Q96IZ5 413 aaKnown RBP12.51□□□□□ -0.41
CD44-203ENST00000278386 MRGPRX2Q96LB1 330 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 PDE7BQ9NP56 450 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 IMP3Q9NV31 184 aaKnown RBP12.51□□□□□ -0.41
CD44-203ENST00000278386 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.51□□□□□ -0.41
CD44-203ENST00000278386 IL17CQ9P0M4 197 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 FAM8A1Q9UBU6 413 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 INTUQ9ULD6 942 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 KCTD3Q9Y597 815 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 DOPEY2Q9Y3R5 2298 aa12.51□□□□□ -0.41
CD44-203ENST00000278386 TNRC6AQ8NDV7 1962 aaKnown RBP12.5□□□□□ -0.41
CD44-203ENST00000278386 hCG_1818297A0A087WSY0 165 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 CDC14CA4D256 554 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 AKR1B15C9JRZ8 316 aaPredicted RBP12.5□□□□□ -0.41
CD44-203ENST00000278386 STX7O15400 261 aaKnown RBP12.5□□□□□ -0.41
CD44-203ENST00000278386 UGT1A9O60656 530 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 KCNJ13O60928 360 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 SPAG6O75602 509 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 POP7O75817 140 aaKnown RBP12.5□□□□□ -0.41
CD44-203ENST00000278386 MT-ND3P03897 115 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 FGF5P12034 268 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 UGT1A6P19224 532 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 MSH3P20585 1137 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 UGT1A1P22309 533 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 UGT1A4P22310 534 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 FECHP22830 423 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 CASRP41180 1078 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 MARCKSL1P49006 195 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 ADCY2Q08462 1091 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 MPP3Q13368 585 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 DNASE1L3Q13609 305 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 CRTC2Q53ET0 693 aaPredicted RBP12.5□□□□□ -0.41
CD44-203ENST00000278386 COLEC12Q5KU26 742 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 DNTTIP2Q5QJE6 756 aaKnown RBP12.5□□□□□ -0.41
CD44-203ENST00000278386 GPRC6AQ5T6X5 926 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 CCDC181Q5TID7 509 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 TMEM220Q6QAJ8 160 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 FAM83HQ6ZRV2 1179 aaPredicted RBP12.5□□□□□ -0.41
CD44-203ENST00000278386 RASGEF1AQ8N9B8 481 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 RNF214Q8ND24 703 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 FCRL5Q96RD9 977 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 VAT1Q99536 393 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 FICDQ9BVA6 458 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 TSPY26PQ9H489 355 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 UGT1A7Q9HAW7 530 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 UGT1A10Q9HAW8 530 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 UGT1A8Q9HAW9 530 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 EPHA6Q9UF33 1036 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 KCND3Q9UK17 655 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 RARRES3Q9UL19 164 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 POLHQ9Y253 713 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 TP53TG5Q9Y2B4 290 aa12.5□□□□□ -0.41
CD44-203ENST00000278386 CFAP20Q9Y6A4 193 aaKnown RBP12.5□□□□□ -0.41
CD44-203ENST00000278386 UBR5O95071 2799 aaPredicted RBP12.5□□□□□ -0.41
CD44-203ENST00000278386 PIKFYVEQ9Y2I7 2098 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 IGHV5-51A0A0C4DH38 117 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 HACD1B0YJ81 288 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 H7C0C1 242 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 TIAF1O95411 115 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 PRAMEF1O95521 474 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 EPOP01588 193 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 EBLN1P0CF75 366 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 MTHFD1P11586 935 aaKnown RBP12.49□□□□□ -0.41
CD44-203ENST00000278386 NELFEP18615 380 aaKnown RBP12.49□□□□□ -0.41
CD44-203ENST00000278386 NR1D1P20393 614 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 MAGEA1P43355 309 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 ATP5OP48047 213 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 DMPKQ09013 629 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 KCNAB1Q14722 419 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 RPE65Q16518 533 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 TAZQ16635 292 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 LONRF2Q1L5Z9 754 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.49□□□□□ -0.41
CD44-203ENST00000278386 FNBP1LQ5T0N5 605 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 ITPRIPL1Q6GPH6 555 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 DUS1LQ6P1R4 473 aaKnown RBP12.49□□□□□ -0.41
CD44-203ENST00000278386 KATNAL2Q8IYT4 538 aa12.49□□□□□ -0.41
CD44-203ENST00000278386 BEND7Q8N7W2 519 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms