RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 OTOAQ7RTW8 1153 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 PIWIL4Q7Z3Z4 852 aaKnown RBP19.84■□□□□ 0.77
CLN3-250ENST00000636839 LCA5Q86VQ0 697 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 EXT2Q93063 718 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 DCUN1D1Q96GG9 259 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 VPS35Q96QK1 796 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 ELAC2Q9BQ52 826 aaKnown RBP19.84■□□□□ 0.77
CLN3-250ENST00000636839 SYTL2Q9HCH5 934 aa19.84■□□□□ 0.77
CLN3-250ENST00000636839 TBC1D3DA0A087WVF3 549 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TBC1D3IA0A087WXS9 549 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TBC1D3EA0A087X179 549 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TBC1D3KA0A087X1G2 549 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 NPEPPSL1A6NEC2 478 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TBC1D3FA6NER0 549 aaPredicted RBP19.83■□□□□ 0.77
CLN3-250ENST00000636839 FAM170BA6NMN3 283 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TBC1D3LB9A6J9 549 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TBC1D3HP0C7X1 549 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 MSH3P20585 1137 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 CD9P21926 228 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 ACSL1P33121 698 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 SLC26A3P40879 764 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 CCR10P46092 362 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 PPP2CBP62714 309 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 PPP2CAP67775 309 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 DPTQ07507 201 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TBC1D3GQ6DHY5 549 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TBC1D3CQ6IPX1 549 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TRIM67Q6ZTA4 783 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TBC1D3Q8IZP1 549 aaPredicted RBP19.83■□□□□ 0.77
CLN3-250ENST00000636839 LGR4Q9BXB1 951 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 PITPNM3Q9BZ71 974 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 FBRSQ9HAH7 460 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 CYP4F12Q9HCS2 524 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 OXSMQ9NWU1 459 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 FAM8A1Q9UBU6 413 aa19.83■□□□□ 0.77
CLN3-250ENST00000636839 TMEM202A6NGA9 273 aa19.83■□□□□ 0.76
CLN3-250ENST00000636839 SRRM3A6NNA2 597 aaPredicted RBP19.83■□□□□ 0.76
CLN3-250ENST00000636839 RAD51BO15315 384 aa19.83■□□□□ 0.76
CLN3-250ENST00000636839 RNGTTO60942 597 aaKnown RBP19.83■□□□□ 0.76
CLN3-250ENST00000636839 SKIV2L2P42285 1042 aaKnown RBP19.83■□□□□ 0.76
CLN3-250ENST00000636839 TPMTP51580 245 aa19.83■□□□□ 0.76
CLN3-250ENST00000636839 IL2P60568 153 aa19.83■□□□□ 0.76
CLN3-250ENST00000636839 TMEM115Q12893 351 aaPredicted RBP19.83■□□□□ 0.76
CLN3-250ENST00000636839 ILF2Q12905 390 aaKnown RBP19.83■□□□□ 0.76
CLN3-250ENST00000636839 TSNQ15631 228 aaKnown RBP19.83■□□□□ 0.76
CLN3-250ENST00000636839 KLC3Q6P597 504 aa19.83■□□□□ 0.76
CLN3-250ENST00000636839 FOXR1Q6PIV2 292 aa19.83■□□□□ 0.76
CLN3-250ENST00000636839 ZNF765Q7L2R6 523 aa19.83■□□□□ 0.76
CLN3-250ENST00000636839 DERL2Q9GZP9 239 aa19.83■□□□□ 0.76
CLN3-250ENST00000636839 FZD3Q9NPG1 666 aa19.83■□□□□ 0.76
CLN3-250ENST00000636839 TMEM98Q9Y2Y6 226 aa19.83■□□□□ 0.76
CLN3-250ENST00000636839 C19orf67A6NJJ6 358 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 EDF1O60869 148 aaKnown RBP19.82■□□□□ 0.76
CLN3-250ENST00000636839 RALBP11234 206 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 ACADMP11310 421 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 PNCKQ6P2M8 343 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 PPP1R14CQ8TAE6 165 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 INPP5DQ92835 1189 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 MYOCQ99972 504 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 OR2AG1Q9H205 316 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 LTB4R2Q9NPC1 389 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 CD320Q9NPF0 282 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 WNT16Q9UBV4 365 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 PCYT1BQ9Y5K3 369 aaPredicted RBP19.82■□□□□ 0.76
CLN3-250ENST00000636839 MUC3AQ02505 3323 aa19.82■□□□□ 0.76
CLN3-250ENST00000636839 BTN3A1O00481 513 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 PRKCQQ04759 706 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 STX3Q13277 289 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 TTC31Q49AM3 519 aaPredicted RBP19.81■□□□□ 0.76
CLN3-250ENST00000636839 TMEM259Q4ZIN3 620 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 RPS27LQ71UM5 84 aaKnown RBP19.81■□□□□ 0.76
CLN3-250ENST00000636839 PGBD3Q8N328 593 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 ZBTB2Q8N680 514 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 PHF21BQ96EK2 531 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 GATA5Q9BWX5 397 aaPredicted RBP19.81■□□□□ 0.76
CLN3-250ENST00000636839 SPATS2LQ9NUQ6 558 aaKnown RBP19.81■□□□□ 0.76
CLN3-250ENST00000636839 OR1A2Q9Y585 309 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 KANSL1LA0AUZ9 987 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 UBXN8O00124 270 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 APOA4P06727 396 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 RBP1P09455 135 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 OR56A5P0C7T3 313 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 STARD6P59095 220 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 INPP5AQ14642 412 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 HSF5Q4G112 596 aaPredicted RBP19.81■□□□□ 0.76
CLN3-250ENST00000636839 FBXO48Q5FWF7 155 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 LDLRAP1Q5SW96 308 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 ANO7Q6IWH7 933 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 UGT3A1Q6NUS8 523 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 CCDC91Q7Z6B0 441 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 ADGRG6Q86SQ4 1221 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 VRK3Q8IV63 474 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 RAVER1Q8IY67 606 aaKnown RBP19.81■□□□□ 0.76
CLN3-250ENST00000636839 NKAPQ8N5F7 415 aaKnown RBP19.81■□□□□ 0.76
CLN3-250ENST00000636839 LILRA3Q8N6C8 439 aaPredicted RBP19.81■□□□□ 0.76
CLN3-250ENST00000636839 OR6Y1Q8NGX8 325 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 TSSK1BQ9BXA7 367 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 C1QTNF2Q9BXJ5 285 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 THEGQ9P2T0 379 aa19.81■□□□□ 0.76
CLN3-250ENST00000636839 SLC31A1O15431 190 aa19.8■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms