RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 CEP83Q9Y592 693 aa4.47□□□□□ -1.69
LINC00540-201ENST00000611481 UTP18Q9Y5J1 556 aaKnown RBP eCLIP4.47□□□□□ -1.69
LINC00540-201ENST00000611481 SHANK1Q9Y566 2161 aa4.47□□□□□ -1.69
LINC00540-201ENST00000611481 HEATR9A2RTY3 570 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 EFCAB7A8K855 629 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TCP11X1B4DZS4 312 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 PRSS44E7EML9 344 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 F5H0A9 414 aaPredicted RBP4.46□□□□□ -1.7
LINC00540-201ENST00000611481 ASAP2O43150 1006 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TULP3O75386 442 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 IL18RAPO95256 599 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 CALM1P0DP23 149 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 CALM2P0DP24 149 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 CALM3P0DP25 149 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 ACADMP11310 421 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TSHRP16473 764 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 HMGA1P17096 107 aaKnown RBP4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TGM2P21980 687 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 ACSL1P33121 698 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 HSPA7P48741 367 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 ALDH9A1P49189 494 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TUFMP49411 452 aaKnown RBP4.46□□□□□ -1.7
LINC00540-201ENST00000611481 JAK3P52333 1124 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 LTBQ06643 244 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 DMP1Q13316 513 aaPredicted RBP4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TFDP1Q14186 410 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 CCNG2Q16589 344 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 ZNF260Q3ZCT1 412 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 FLYWCH1Q4VC44 716 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 CCDC92Q53HC0 331 aaPredicted RBP4.46□□□□□ -1.7
LINC00540-201ENST00000611481 ATF7IP2Q5U623 682 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 RHBDF2Q6PJF5 856 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 NEK10Q6ZWH5 1172 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 SLC29A4Q7RTT9 530 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 ZFAND4Q86XD8 727 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 KRT73Q86Y46 540 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TMTC1Q8IUR5 882 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 SAMD14Q8IZD0 417 aaPredicted RBP4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TERB1Q8NA31 727 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TMIEQ8NEW7 156 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 POC1BQ8TC44 478 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 ADAMTS18Q8TE60 1221 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 LRRC15Q8TF66 581 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TCP11Q8WWU5 503 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 CENPIQ92674 756 aaPredicted RBP4.46□□□□□ -1.7
LINC00540-201ENST00000611481 PRCCQ92733 491 aaPredicted RBP4.46□□□□□ -1.7
LINC00540-201ENST00000611481 GRAMD1AQ96CP6 724 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 REPS1Q96D71 796 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 CEP170P1Q96L14 293 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 OSBPL9Q96SU4 736 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TREX2Q9BQ50 279 aaPredicted RBP4.46□□□□□ -1.7
LINC00540-201ENST00000611481 TMEM79Q9BSE2 394 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 SPZ1Q9BXG8 430 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 SPRTNQ9H040 489 aaPredicted RBP4.46□□□□□ -1.7
LINC00540-201ENST00000611481 MAGEH1Q9H213 219 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 VPS16Q9H269 839 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 PNPLA8Q9NP80 782 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 ANKEF1Q9NU02 776 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 DEC1Q9P2X7 70 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 GRHPRQ9UBQ7 328 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 CROCCQ5TZA2 2017 aa4.46□□□□□ -1.7
LINC00540-201ENST00000611481 OBSL1O75147 1896 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 CCDC187A0A096LP49 1063 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 SMIM28A0A1B0GU29 152 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 CCDC154A6NI56 674 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 OR6C75A6NL08 312 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 A6NLC8 198 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 K7EM74 188 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 MYO1FO00160 1098 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 APOL1O14791 398 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 HTRA2O43464 458 aaPredicted RBP4.45□□□□□ -1.7
LINC00540-201ENST00000611481 HMMRO75330 724 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 NXPH3O95157 252 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 OAZ2O95190 189 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 SEMA4FO95754 770 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 IGLV3-19P01714 112 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 CKMT1AP12532 417 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 SFNP31947 248 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 KRT20P35900 424 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 NT5C2P49902 561 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 BCAT1P54687 386 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 HDAC4P56524 1084 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 ZBED6P86452 979 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 ZXDBP98169 803 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 GAD2Q05329 585 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 GALNT1Q10472 559 aaPredicted RBP4.45□□□□□ -1.7
LINC00540-201ENST00000611481 CAPSQ13938 189 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 DAG1Q14118 895 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 KCNB1Q14721 858 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 EMC2Q15006 297 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 TBCCQ15814 346 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 PFKFB4Q16877 469 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 MPEG1Q2M385 716 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 SLC45A4Q5BKX6 768 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 THEMIS2Q5TEJ8 643 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 PXDC1Q5TGL8 231 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 ARMCX5Q6P1M9 558 aa4.45□□□□□ -1.7
LINC00540-201ENST00000611481 RBM44Q6ZP01 1051 aaKnown RBP4.45□□□□□ -1.7
LINC00540-201ENST00000611481 Q71RC1 249 aaPredicted RBP4.45□□□□□ -1.7
LINC00540-201ENST00000611481 MIER3Q7Z3K6 550 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms