RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 CPED1A4D0V7 1026 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 OR2AG2A6NM03 316 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 GOLGA8MH3BSY2 632 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 AP3B1O00203 1094 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 NTN3O00634 580 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 PPM1DO15297 605 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 OPA1O60313 960 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 PNLIPP16233 465 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 GLB1P16278 677 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 ARCN1P48444 511 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 RPIAP49247 311 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 PRLHRP49683 370 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 PDX1P52945 283 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 MRPS25P82663 173 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 CAMK2BQ13554 666 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 LAMB3Q13751 1172 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 CCDC157Q569K6 752 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 ZRANB3Q5FWF4 1079 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 CHCHD2P9Q5T1J5 151 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 ARMC3Q5W041 872 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 IYDQ6PHW0 289 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 DET1Q7L5Y6 550 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 RUNDC3BQ96NL0 473 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 FCRL3Q96P31 734 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 KRT12Q99456 494 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 COPS8Q99627 209 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 CCDC3Q9BQI4 270 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 WDR83Q9BRX9 315 aaKnown RBP19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 PRDM8Q9NQV8 689 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 BFARQ9NZS9 450 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 NEUROG3Q9Y4Z2 214 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 DNMT3AQ9Y6K1 912 aaPredicted RBP19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 PRSS21Q9Y6M0 314 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 ACACBO00763 2458 aa19.19■□□□□ 0.66
SHKBP1-221ENST00000599833 IGF2RP11717 2491 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 A0A1W2PQM1 296 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 NUDT21O43809 227 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 POP7O75817 140 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 CDK4P11802 303 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 FASLGP48023 281 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 UBE2IP63279 158 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 C2orf54Q08AI8 447 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 DHX34Q14147 1143 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 MSS51Q4VC12 460 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 HES3Q5TGS1 186 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 HIBCHQ6NVY1 386 aaPredicted RBP19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 AFTPHQ6ULP2 937 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 CES3Q6UWW8 571 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 PACS1Q6VY07 963 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 CCNI2Q6ZMN8 369 aaPredicted RBP19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 TRAPPC5Q8IUR0 188 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 CACTIN-AS1Q8N1I8 211 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 DCBLD1Q8N8Z6 715 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 NAT6Q93015 286 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 ZCCHC2Q9C0B9 1178 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 PLAC1Q9HBJ0 212 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 XAB2Q9HCS7 855 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 ASIC3Q9UHC3 531 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 WDR37Q9Y2I8 494 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 TPRP12270 2363 aaKnown RBP19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 KIF26BQ2KJY2 2108 aa19.18■□□□□ 0.66
SHKBP1-221ENST00000599833 F3P13726 295 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 ATP1B2P14415 290 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 MSH3P20585 1137 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 AKT1P31749 480 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 E2F1Q01094 437 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 ITIH4Q14624 930 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 INSCQ1MX18 579 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 FNBP1LQ5T0N5 605 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 IZUMO3Q5VZ72 239 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 ABRAXAS1Q6UWZ7 409 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 WASH2PQ6VEQ5 465 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 TMEM135Q86UB9 458 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 HOOK3Q86VS8 718 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 TMPRSS12Q86WS5 348 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 LILRA3Q8N6C8 439 aaPredicted RBP19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 CLDN19Q8N6F1 224 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 OR4L1Q8NH43 312 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 WASH6PQ9NQA3 447 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 LRIT1Q9P2V4 623 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 CDC23Q9UJX2 597 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 DNAJC16Q9Y2G8 782 aa19.17■□□□□ 0.66
SHKBP1-221ENST00000599833 ZCWPW2A0A1B0GU75 182 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 FAM149AA5PLN7 773 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 RAD51CO43502 376 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 B4GAT1O43505 415 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 SEC31AO94979 1220 aaKnown RBP19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 GTF2H3Q13889 308 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 NFE2L1Q14494 772 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 AGAP9Q5VTM2 703 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 KIAA0930Q6ICG6 404 aaPredicted RBP19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 TMPRSS9Q7Z410 1059 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 SPRED1Q7Z699 444 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 OR6C4Q8NGE1 309 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 OR2L2Q8NH16 312 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 GATA6Q92908 595 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 ZNF514Q96K75 400 aaPredicted RBP19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 PWWP2AQ96N64 755 aa19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 ZNF624Q9P2J8 865 aaPredicted RBP19.16■□□□□ 0.66
SHKBP1-221ENST00000599833 ANGPTL2Q9UKU9 493 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms