RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 AURKAO14965 403 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 STX7O15400 261 aaKnown RBP13.27□□□□□ -0.29
CLK3-218ENST00000566926 RIPK2O43353 540 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 NUDT21O43809 227 aaKnown RBP13.27□□□□□ -0.29
CLK3-218ENST00000566926 VEGFDO43915 354 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 CRTAMO95727 393 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 FUCA1P04066 466 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 LPOP22079 712 aaPredicted RBP13.27□□□□□ -0.29
CLK3-218ENST00000566926 ADRA1AP35348 466 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 SPAM1P38567 509 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 ACTR1BP42025 376 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 NPY2RP49146 381 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 ACTR1AP61163 376 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 CDH17Q12864 832 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 BIRC2Q13490 618 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 CAMK2BQ13554 666 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 ITGA9Q13797 1035 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 TAF1AQ15573 450 aaPredicted RBP13.27□□□□□ -0.29
CLK3-218ENST00000566926 CDCP2Q5VXM1 449 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 MARK2Q7KZI7 788 aaKnown RBP13.27□□□□□ -0.29
CLK3-218ENST00000566926 CAND1Q86VP6 1230 aaKnown RBP13.27□□□□□ -0.29
CLK3-218ENST00000566926 NRROSQ86YC3 692 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 IQCKQ8N0W5 287 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 TTC30BQ8N4P2 665 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 TAB3Q8N5C8 712 aaPredicted RBP13.27□□□□□ -0.29
CLK3-218ENST00000566926 CCL4L1Q8NHW4 92 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 BRSK1Q8TDC3 778 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 ZDHHC1Q8WTX9 485 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 PTCD2Q8WV60 388 aaKnown RBP13.27□□□□□ -0.29
CLK3-218ENST00000566926 ZCCHC14Q8WYQ9 949 aaKnown RBP13.27□□□□□ -0.29
CLK3-218ENST00000566926 C19orf43Q9BQ61 176 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 TBL1YQ9BQ87 522 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 CCDC3Q9BQI4 270 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 CCDC77Q9BR77 488 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 ARNT2Q9HBZ2 717 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 BPIFA1Q9NP55 256 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 BFARQ9NZS9 450 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 DKK4Q9UBT3 224 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 PIKFYVEQ9Y2I7 2098 aa13.27□□□□□ -0.29
CLK3-218ENST00000566926 URB1O60287 2271 aaKnown RBP13.27□□□□□ -0.29
CLK3-218ENST00000566926 GOLGA6L10A6NI86 522 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 GRID2O43424 1007 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 NUAK1O60285 661 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 NOBOXO60393 691 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 DNAJC6O75061 913 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 SLC2A4P14672 509 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 AK4P27144 223 aaPredicted RBP13.26□□□□□ -0.29
CLK3-218ENST00000566926 LAMB3Q13751 1172 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 GTF2H3Q13889 308 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 SPIDRQ14159 915 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 BBS9Q3SYG4 887 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 HSP90B2PQ58FF3 399 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 PERM1Q5SV97 790 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 CERCAMQ5T4B2 595 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 ZNF449Q6P9G9 518 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 SLC30A9Q6PML9 568 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 RBM44Q6ZP01 1051 aaKnown RBP13.26□□□□□ -0.29
CLK3-218ENST00000566926 CHST15Q7LFX5 561 aaPredicted RBP13.26□□□□□ -0.29
CLK3-218ENST00000566926 PALM2Q8IXS6 379 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 CCDC74AQ96AQ1 378 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 GORASP1Q9BQQ3 440 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 ZCCHC2Q9C0B9 1178 aaKnown RBP13.26□□□□□ -0.29
CLK3-218ENST00000566926 IL22Q9GZX6 179 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 EPG5Q9HCE0 2579 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 MED4Q9NPJ6 270 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 CASS4Q9NQ75 786 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 SPATS2LQ9NUQ6 558 aaKnown RBP13.26□□□□□ -0.29
CLK3-218ENST00000566926 LRIT1Q9P2V4 623 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 ATXN10Q9UBB4 475 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 FETUBQ9UGM5 382 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 APPL1Q9UKG1 709 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 TEX264Q9Y6I9 313 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 OAS3Q9Y6K5 1087 aaKnown RBP13.26□□□□□ -0.29
CLK3-218ENST00000566926 SPEGQ15772 3267 aa13.26□□□□□ -0.29
CLK3-218ENST00000566926 A0A087WUV0 522 aaPredicted RBP13.25□□□□□ -0.29
CLK3-218ENST00000566926 GLYATL1P3A0A0U1RQE8 302 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 RHPN2P1A8MT19 583 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 TMX2-CTNND1H3BSU7 103 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 KMOO15229 486 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 STX2P32856 288 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 HADHAP40939 763 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 CLDN6P56747 220 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 IFFO1Q0D2I5 559 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 UAP1Q16222 522 aaPredicted RBP13.25□□□□□ -0.29
CLK3-218ENST00000566926 KCTD19Q17RG1 926 aaPredicted RBP13.25□□□□□ -0.29
CLK3-218ENST00000566926 LDLRAP1Q5SW96 308 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 FNBP1LQ5T0N5 605 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 CYS1Q717R9 158 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 ZNF534Q76KX8 674 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 C17orf82Q86X59 251 aaPredicted RBP13.25□□□□□ -0.29
CLK3-218ENST00000566926 DNAAF3Q8N9W5 541 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 GDAP1Q8TB36 358 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 GFM1Q96RP9 751 aaKnown RBP13.25□□□□□ -0.29
CLK3-218ENST00000566926 EBNA1BP2Q99848 306 aaKnown RBP13.25□□□□□ -0.29
CLK3-218ENST00000566926 APOL2Q9BQE5 337 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 TMEM109Q9BVC6 243 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 ROPN1BQ9BZX4 212 aaPredicted RBP13.25□□□□□ -0.29
CLK3-218ENST00000566926 OR2AG1Q9H205 316 aa13.25□□□□□ -0.29
CLK3-218ENST00000566926 STN1Q9H668 368 aaKnown RBP13.25□□□□□ -0.29
CLK3-218ENST00000566926 SYNDIG1Q9H7V2 258 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms