RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 OXSMQ9NWU1 459 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 UCKL1Q9NWZ5 548 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 DNMT3LQ9UJW3 386 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 FZD10Q9ULW2 581 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 POLHQ9Y253 713 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 USP3Q9Y6I4 520 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 PDZK1P1A8MUH7 402 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 M0QYT0 321 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 TK2O00142 265 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 AP3D1O14617 1153 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 ENPP3O14638 875 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 SRP72O76094 671 aaKnown RBP13.18□□□□□ -0.3
CLK3-206ENST00000562078 MSL3P1P0C860 447 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 S100A5P33763 92 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 SOX11P35716 441 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 ARL4AP40617 200 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 PGGT1BP53609 377 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 NCS1P62166 190 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 POU6F2P78424 691 aaPredicted RBP13.18□□□□□ -0.3
CLK3-206ENST00000562078 FCHO2Q0JRZ9 810 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 SKIV2LQ15477 1246 aaKnown RBP13.18□□□□□ -0.3
CLK3-206ENST00000562078 FAM26DQ5JW98 314 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 GPRIN1Q7Z2K8 1008 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 CTU1Q7Z7A3 348 aaKnown RBP13.18□□□□□ -0.3
CLK3-206ENST00000562078 UBE2Q1Q7Z7E8 422 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 NETO2Q8NC67 525 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 MCUQ8NE86 351 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 CHAC2Q8WUX2 184 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 KCTD13Q8WZ19 329 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 CDKL2Q92772 493 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 BIRC7Q96CA5 298 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 MRPL9Q9BYD2 267 aaKnown RBP13.18□□□□□ -0.3
CLK3-206ENST00000562078 ULBP1Q9BZM6 244 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 TOR4AQ9NXH8 423 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 DTLQ9NZJ0 730 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 FIS1Q9Y3D6 152 aa13.18□□□□□ -0.3
CLK3-206ENST00000562078 H3BUI4 141 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 GABARAPO95166 117 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 POMCP01189 267 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 NOS2P35228 1153 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 LHX1P48742 406 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 PRKAA1Q13131 559 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 FASTKQ14296 549 aaKnown RBP13.17□□□□□ -0.3
CLK3-206ENST00000562078 PRPSAP1Q14558 356 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 INPP5AQ14642 412 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 GDPD3Q7L5L3 318 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 ADGRG5Q8IZF4 528 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 TMEM86AQ8N2M4 240 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 OR9I1Q8NGQ6 314 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 DYNC2LI1Q8TCX1 351 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 PHF10Q8WUB8 498 aaKnown RBP13.17□□□□□ -0.3
CLK3-206ENST00000562078 QKIQ96PU8 341 aaKnown RBP eCLIP13.17□□□□□ -0.3
CLK3-206ENST00000562078 NPY6RQ99463 290 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 SMOQ99835 787 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 RHOBTB2Q9BYZ6 727 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 NMRAL1Q9HBL8 299 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 GMIPQ9P107 970 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 OGDHLQ9ULD0 1010 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 PNMA8BQ9ULN7 279 aaPredicted RBP13.17□□□□□ -0.3
CLK3-206ENST00000562078 A0A096LPK6 155 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 MFSD11O43934 449 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 SCO1O75880 301 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 GSTM1P09488 218 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 MAGEA6P43360 314 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 YBX1P67809 324 aaKnown RBP13.17□□□□□ -0.3
CLK3-206ENST00000562078 FAM219BQ5XKK7 198 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 SDE2Q6IQ49 451 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 TUBA3EQ6PEY2 450 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 HID1Q8IV36 788 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 NLGN4XQ8N0W4 816 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 METTL4Q8N3J2 472 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 HASPINQ8TF76 798 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 PIK3R3Q92569 461 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 MYRFLQ96LU7 910 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 AIFM2Q9BRQ8 373 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 SLIRPQ9GZT3 109 aaKnown RBP13.17□□□□□ -0.3
CLK3-206ENST00000562078 CCDC90BQ9GZT6 254 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 PIGVQ9NUD9 493 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 COQ3Q9NZJ6 369 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 STAP1Q9ULZ2 295 aa13.17□□□□□ -0.3
CLK3-206ENST00000562078 YJEFN3A6XGL0 299 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 PTGES3LE9PB15 166 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 NME4O00746 187 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 SDHDO14521 159 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 PQBP1O60828 265 aaKnown RBP13.16□□□□□ -0.3
CLK3-206ENST00000562078 PTTG1O95997 202 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 PRKACAP17612 351 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 FSHRP23945 695 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 HTR3AP46098 478 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 NR2C2P49116 596 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 ATN1P54259 1190 aaPredicted RBP13.16□□□□□ -0.3
CLK3-206ENST00000562078 SESN2P58004 480 aaPredicted RBP13.16□□□□□ -0.3
CLK3-206ENST00000562078 STK11Q15831 433 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 MEP1AQ16819 746 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 UPP1Q16831 310 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 TIGD5Q53EQ6 642 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 NXNL2Q5VZ03 156 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 BSPRYQ5W0U4 402 aa13.16□□□□□ -0.3
CLK3-206ENST00000562078 HEATR6Q6AI08 1181 aaKnown RBP13.16□□□□□ -0.3
CLK3-206ENST00000562078 ZNF438Q7Z4V0 828 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms