RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SLC22A3O75751 556 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 MLYCDO95822 493 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 GLP2RO95838 553 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 SEPHS1P49903 392 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 POLR2JP52435 117 aaKnown RBP12.21□□□□□ -0.45
LDLR-205ENST00000557933 OCA2Q04671 838 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 TMEM179BQ7Z7N9 219 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 LGI2Q8N0V4 545 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 OR13F1Q8NGS4 319 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 BHMTQ93088 406 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 FEM1CQ96JP0 617 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 BARD1Q99728 777 aaKnown RBP12.21□□□□□ -0.45
LDLR-205ENST00000557933 HOPXQ9BPY8 73 aaPredicted RBP12.21□□□□□ -0.45
LDLR-205ENST00000557933 KLHL25Q9H0H3 589 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 RAD21L1Q9H4I0 556 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 ZNHIT2Q9UHR6 403 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 DERAQ9Y315 318 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 POLR3HQ9Y535 204 aaPredicted RBP12.21□□□□□ -0.45
LDLR-205ENST00000557933 MIA3Q5JRA6 1907 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 H0YJX3 145 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 LDB2O43679 373 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 SNX2O60749 519 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 COQ9O75208 318 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 IGHA2P01877 340 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 FTH1P02794 183 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 MMP2P08253 660 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 GSTT2P0CG29 244 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 GSTT2BP0CG30 244 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 EFNA1P20827 205 aaPredicted RBP12.21□□□□□ -0.45
LDLR-205ENST00000557933 ACADVLP49748 655 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 ZNF157P51786 506 aaPredicted RBP12.21□□□□□ -0.45
LDLR-205ENST00000557933 ATP6AP1LQ52LC2 224 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 TMEM53Q6P2H8 277 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 SPRED1Q7Z699 444 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 RAB44Q7Z6P3 723 aaPredicted RBP12.21□□□□□ -0.45
LDLR-205ENST00000557933 SLCO6A1Q86UG4 719 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 IFNL1Q8IU54 200 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 FAM126BQ8IXS8 530 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 C10orf111Q8N326 155 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 KLHDC9Q8NEP7 349 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 GLMNQ92990 594 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 RMDN1Q96DB5 314 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 CCDC126Q96EE4 140 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 AMBNQ9NP70 447 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 SUN2Q9UH99 717 aa12.21□□□□□ -0.45
LDLR-205ENST00000557933 A0A1W2PP18 115 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 KRT87PA6NCN2 255 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 KDM1AO60341 852 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 CLPXO76031 633 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 PRSS23O95084 383 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 THRBP10828 461 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 HSD17B1P14061 328 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 HPCAL1P37235 193 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 HLCSP50747 726 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 NCS1P62166 190 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 HMGCS1Q01581 520 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 CD47Q08722 323 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 KCNAB2Q13303 367 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 SMYD5Q6GMV2 418 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 IL27RAQ6UWB1 636 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 SPARTQ8N0X7 666 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 MINDY1Q8N5J2 469 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 IGSF8Q969P0 613 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 GFM2Q969S9 779 aaKnown RBP12.21□□□□□ -0.46
LDLR-205ENST00000557933 TSPAN17Q96FV3 270 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 VTA1Q9NP79 307 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 RASSF1Q9NS23 344 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 KLQ9UEF7 1012 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 BAG5Q9UL15 447 aa12.21□□□□□ -0.46
LDLR-205ENST00000557933 DOCK3Q8IZD9 2030 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 A0A0D9SEW6 157 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 ESRRBO95718 433 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 ALDH1A1P00352 501 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 F9P00740 461 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 CST1P01037 141 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 MBL2P11226 248 aaPredicted RBP12.2□□□□□ -0.46
LDLR-205ENST00000557933 ZFP36L2P47974 494 aaKnown RBP12.2□□□□□ -0.46
LDLR-205ENST00000557933 MASP1P48740 699 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 SEMG2Q02383 582 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 SFSWAPQ12872 951 aaKnown RBP12.2□□□□□ -0.46
LDLR-205ENST00000557933 NR6A1Q15406 480 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 PTPRNQ16849 979 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 C17orf99Q6UX52 265 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 CADM3Q8N126 398 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 SFRP1Q8N474 314 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 NPLOC4Q8TAT6 608 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 PROKR1Q8TCW9 393 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 ZUFSPQ96AP4 578 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 SPON2Q9BUD6 331 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 SLC52A3Q9NQ40 469 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 FARSBQ9NSD9 589 aaKnown RBP12.2□□□□□ -0.46
LDLR-205ENST00000557933 CD274Q9NZQ7 290 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 VAPAQ9P0L0 249 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 POU2F3Q9UKI9 436 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 A0A1W2PQ67 120 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 ARL5CA6NH57 179 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 A8MX80 341 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 UPK1AO00322 258 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 THP07101 528 aa12.2□□□□□ -0.46
LDLR-205ENST00000557933 JAK1P23458 1154 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms