RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PTPN4P29074 926 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 DPYSQ14117 519 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 SYCP1Q15431 976 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 CHRNA6Q15825 494 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.32□□□□□ -0.76
VPS29-208ENST00000550267 CACHD1Q5VU97 1274 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 SLC6A19Q695T7 634 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 PWWP2BQ6NUJ5 590 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 FAM92BQ6ZTR7 304 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 CYP4V2Q6ZWL3 525 aaPredicted RBP10.32□□□□□ -0.76
VPS29-208ENST00000550267 PRSS42Q7Z5A4 293 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 SYVN1Q86TM6 617 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 PHYKPLQ8IUZ5 450 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 TRIM48Q8IWZ4 208 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 BBS5Q8N3I7 341 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 AVL9Q8NBF6 648 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 KLHL6Q8WZ60 621 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 SEC14L1Q92503 715 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 RSC1A1Q92681 617 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 C19orf60Q96EN9 201 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 OSGEPL1Q9H4B0 414 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 RMI1Q9H9A7 625 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 KLC4Q9NSK0 619 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 ETNK2Q9NVF9 386 aa10.32□□□□□ -0.76
VPS29-208ENST00000550267 ZNF624Q9P2J8 865 aaPredicted RBP10.32□□□□□ -0.76
VPS29-208ENST00000550267 ELOA3CA0A087WX78 387 aaPredicted RBP10.31□□□□□ -0.76
VPS29-208ENST00000550267 ELOA3DA6NLF2 546 aaPredicted RBP10.31□□□□□ -0.76
VPS29-208ENST00000550267 NUAK1O60285 661 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 DPM1O60762 260 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 CLDN7O95471 211 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 XRCC1P18887 633 aaPredicted RBP10.31□□□□□ -0.76
VPS29-208ENST00000550267 MMP13P45452 471 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 EPHB1P54762 984 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 RIPPLY3P57055 190 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 RPS15P62841 145 aaKnown RBP10.31□□□□□ -0.76
VPS29-208ENST00000550267 LAMB3Q13751 1172 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 ELOA3BQ3SY89 546 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 TCP11X2Q5H9J9 407 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 RALGPS1Q5JS13 557 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 ZNF648Q5T619 568 aaPredicted RBP10.31□□□□□ -0.76
VPS29-208ENST00000550267 MARC1Q5VT66 337 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 MCOLN2Q8IZK6 566 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 NDUFAF2Q8N183 169 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 RBMXL3Q8N7X1 1067 aaKnown RBP10.31□□□□□ -0.76
VPS29-208ENST00000550267 FDCSPQ8NFU4 85 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 ELOA3Q8NG57 546 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 C5orf34Q96MH7 638 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 AGPAT1Q99943 283 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 NUDT9Q9BW91 350 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 GPR87Q9BY21 358 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 PDE7BQ9NP56 450 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 ARFGAP3Q9NP61 516 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 NT5MQ9NPB1 228 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 ATXN10Q9UBB4 475 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 SLC5A6Q9Y289 635 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 SIK3Q9Y2K2 1263 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 SPTBN1Q01082 2364 aaKnown RBP10.31□□□□□ -0.76
VPS29-208ENST00000550267 SHANK1Q9Y566 2161 aa10.31□□□□□ -0.76
VPS29-208ENST00000550267 ITPR2Q14571 2701 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 PRPSAP2O60256 369 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 CEACAM4O75871 244 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 CBX6O95503 412 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 FOLR1P15328 257 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 ZNF8P17098 575 aaPredicted RBP10.3□□□□□ -0.76
VPS29-208ENST00000550267 NELFEP18615 380 aaKnown RBP10.3□□□□□ -0.76
VPS29-208ENST00000550267 ALAS2P22557 587 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 MIPP30301 263 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 CAPZBP47756 277 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 HCAR3P49019 387 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 CLCNKAP51800 687 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 PPP1CAP62136 330 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 ITKQ08881 620 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 TUBB3Q13509 450 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 IHHQ14623 411 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 KCNAB1Q14722 419 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 SEPT7Q16181 437 aaKnown RBP10.3□□□□□ -0.76
VPS29-208ENST00000550267 DPCR1Q3MIW9 517 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 HENMT1Q5T8I9 393 aaKnown RBP10.3□□□□□ -0.76
VPS29-208ENST00000550267 ACAD10Q6JQN1 1059 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 IRGCQ6NXR0 463 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 CYB5D1Q6P9G0 228 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 ATPAF2Q8N5M1 289 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP10.3□□□□□ -0.76
VPS29-208ENST00000550267 AOPEPQ8N6M6 819 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 SIDT2Q8NBJ9 832 aaKnown RBP10.3□□□□□ -0.76
VPS29-208ENST00000550267 NSMCE1Q8WV22 266 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 PNPLA2Q96AD5 504 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 SNRNP40Q96DI7 357 aaKnown RBP10.3□□□□□ -0.76
VPS29-208ENST00000550267 ZDHHC12Q96GR4 267 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 MDFIQ99750 246 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 TRIM7Q9C029 511 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 CARD9Q9H257 536 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 SLC23A2Q9UGH3 650 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 RARRES3Q9UL19 164 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 CHKBQ9Y259 395 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 FARSAQ9Y285 508 aaKnown RBP10.3□□□□□ -0.76
VPS29-208ENST00000550267 PCDHGB7Q9Y5F8 929 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 CREBBPQ92793 2442 aa10.3□□□□□ -0.76
VPS29-208ENST00000550267 IGHV5-51A0A0C4DH38 117 aa10.29□□□□□ -0.76
VPS29-208ENST00000550267 A6NL46 340 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms