RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SHBQ15464 509 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 PLA2G4EQ3MJ16 856 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 RNF187Q5TA31 235 aaPredicted RBP20.9■□□□□ 0.94
VPS29-206ENST00000549578 CYS1Q717R9 158 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 TRMT10CQ7L0Y3 403 aaKnown RBP20.9■□□□□ 0.94
VPS29-206ENST00000549578 OXR1Q8N573 874 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 GABPB2Q8TAK5 448 aaPredicted RBP20.9■□□□□ 0.94
VPS29-206ENST00000549578 UHMK1Q8TAS1 419 aaKnown RBP20.9■□□□□ 0.94
VPS29-206ENST00000549578 AENQ8WTP8 325 aaKnown RBP20.9■□□□□ 0.94
VPS29-206ENST00000549578 OR2M4Q96R27 311 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 TMEM168Q9H0V1 697 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 RXFP3Q9NSD7 469 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 INTS10Q9NVR2 710 aaKnown RBP20.9■□□□□ 0.94
VPS29-206ENST00000549578 CRYL1Q9Y2S2 319 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 PLEKHM1Q9Y4G2 1056 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 PSAT1Q9Y617 370 aa20.9■□□□□ 0.94
VPS29-206ENST00000549578 A0A1B0GTQ1 180 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 FAM159BA6NKW6 160 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 PRMT5O14744 637 aaPredicted RBP20.89■□□□□ 0.94
VPS29-206ENST00000549578 PFDN6O15212 129 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 CER1O95813 267 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 PHBP35232 272 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 ARRB1P49407 418 aaPredicted RBP20.89■□□□□ 0.94
VPS29-206ENST00000549578 BLKP51451 505 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 ATXN3P54252 364 aaPredicted RBP20.89■□□□□ 0.94
VPS29-206ENST00000549578 EIF3BP55884 814 aaKnown RBP20.89■□□□□ 0.94
VPS29-206ENST00000549578 EFTUD2Q15029 972 aaKnown RBP eCLIP20.89■□□□□ 0.943e-9■■■□□ 18.5
VPS29-206ENST00000549578 KBTBD12Q3ZCT8 623 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 PRRT3Q5FWE3 981 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 LRRTM4Q86VH4 590 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 MINDY1Q8N5J2 469 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 LRRC61Q9BV99 259 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 CLPBQ9H078 707 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 P2RY12Q9H244 342 aa20.89■□□□□ 0.94
VPS29-206ENST00000549578 H3BM21 787 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 RIPK2O43353 540 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 HAUS5O94927 633 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 TUBBP07437 444 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 CELA2BP08218 269 aaPredicted RBP20.88■□□□□ 0.93
VPS29-206ENST00000549578 ACP5P13686 325 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 GABRB3P28472 473 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 ABCG1P45844 678 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 RXRGP48443 463 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 HNRNPKP61978 463 aaKnown RBP eCLIP20.88■□□□□ 0.93
VPS29-206ENST00000549578 BNIP3Q12983 259 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 C1orf61Q13536 156 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 ZNF449Q6P9G9 518 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 CNSTQ6PJW8 725 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 PRR23CQ6ZRP0 262 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 KIAA0408Q6ZU52 694 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 CHST15Q7LFX5 561 aaPredicted RBP20.88■□□□□ 0.93
VPS29-206ENST00000549578 CTAGE3PQ8IX95 158 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 CCL4L1Q8NHW4 92 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 SCG3Q8WXD2 468 aaKnown RBP20.88■□□□□ 0.93
VPS29-206ENST00000549578 CDKL2Q92772 493 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 RABGEF1Q9UJ41 708 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 VPS9D1Q9Y2B5 631 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 ST14Q9Y5Y6 855 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 PIKFYVEQ9Y2I7 2098 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 CTIFO43310 598 aaKnown RBP20.88■□□□□ 0.93
VPS29-206ENST00000549578 PIAS2O75928 621 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 AHSGP02765 367 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 CTSEP14091 401 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 PBLDP30039 288 aaPredicted RBP20.88■□□□□ 0.93
VPS29-206ENST00000549578 FMO4P31512 558 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 LEPRP48357 1165 aaKnown RBP20.88■□□□□ 0.93
VPS29-206ENST00000549578 PRLHRP49683 370 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 BCL7AQ4VC05 210 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 EMBQ6PCB8 327 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 C11orf96Q7Z7L8 435 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 PPM1NQ8N819 430 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 ZNF548Q8NEK5 533 aaPredicted RBP20.88■□□□□ 0.93
VPS29-206ENST00000549578 MYRIPQ8NFW9 859 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 ZNF514Q96K75 400 aaPredicted RBP20.88■□□□□ 0.93
VPS29-206ENST00000549578 EDEM2Q9BV94 578 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 EPB41L4BQ9H329 900 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 UCKL1Q9NWZ5 548 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 SLC23A2Q9UGH3 650 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 GPR34Q9UPC5 381 aa20.88■□□□□ 0.93
VPS29-206ENST00000549578 CABIN1Q9Y6J0 2220 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 RIF1Q5UIP0 2472 aaKnown RBP20.87■□□□□ 0.93
VPS29-206ENST00000549578 IQCF5A8MTL0 148 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 KMOO15229 486 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 DFNA5O60443 496 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 AP2A2O94973 939 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 RPS3P23396 243 aaKnown RBP eCLIP20.87■□□□□ 0.934e-6■■■■□ 22.8
VPS29-206ENST00000549578 EPHA8P29322 1005 aaPredicted RBP20.87■□□□□ 0.93
VPS29-206ENST00000549578 CCT8P50990 548 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 INSCQ1MX18 579 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 CTSL3PQ5NE16 218 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 PTRHD1Q6GMV3 140 aaKnown RBP20.87■□□□□ 0.93
VPS29-206ENST00000549578 STRA8Q7Z7C7 330 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 LMX1AQ8TE12 382 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 UBLCP1Q8WVY7 318 aaPredicted RBP20.87■□□□□ 0.93
VPS29-206ENST00000549578 BIRC8Q96P09 236 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 FUT8Q9BYC5 575 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 ACSS3Q9H6R3 686 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 TRNAU1APQ9NX07 287 aaKnown RBP20.87■□□□□ 0.93
VPS29-206ENST00000549578 KCNK6Q9Y257 313 aa20.87■□□□□ 0.93
VPS29-206ENST00000549578 POP7O75817 140 aaKnown RBP20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms