RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CCT3P49368 545 aaKnown RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 SNX16P57768 344 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 GABARAPL2P60520 117 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 PLIN5Q00G26 463 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 MYL7Q01449 175 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF91Q05481 1191 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 GABPAQ06546 454 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 CDH17Q12864 832 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TRAF3Q13114 568 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 GRB7Q14451 532 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 KIF19Q2TAC6 998 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF484Q5JVG2 852 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 LGSNQ5TDP6 509 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF425Q6IV72 752 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ZBTB33Q86T24 672 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 SLFN12Q8IYM2 578 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 KATNAL2Q8IYT4 538 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TXNDC5Q8NBS9 432 aaKnown RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TBCKQ8TEA7 893 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 PCNPQ8WW12 178 aaKnown RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 APBB2Q92870 758 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 HDAC10Q969S8 669 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 RNF31Q96EP0 1072 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 SLC45A3Q96JT2 553 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 NODALQ96S42 347 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 LXNQ9BS40 222 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 FAM126AQ9BYI3 521 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ILKAPQ9H0C8 392 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 IKZF4Q9H2S9 585 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 MKNK2Q9HBH9 465 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 SMYD2Q9NRG4 433 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 CD300AQ9UGN4 299 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 DRG1Q9Y295 367 aaKnown RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TLR6Q9Y2C9 796 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 NAALAD2Q9Y3Q0 740 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 FRMPD2Q68DX3 1309 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 RPS10-NUDT3A0A1W2PQS6 291 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 DHRS12A0PJE2 317 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 KCNU1A8MYU2 1149 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 NT5C1B-RDH14C9J2C7 533 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 NFIBO00712 420 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ANGPT2O15123 496 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 LRCH4O75427 683 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TNFRSF21O75509 655 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 LDOC1O95751 146 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ITGAVP06756 1048 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 CSH1P0DML2 217 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 CSH2P0DML3 217 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 SLURP2P0DP57 97 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TFE3P19532 575 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 RAP1GAPP47736 663 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 KPNA2P52292 529 aaKnown RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 GDF10P55107 478 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 PER3P56645 1201 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 CREMQ03060 361 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 EMX1Q04741 257 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 EPS8Q12929 822 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 NFX1Q12986 1120 aaKnown RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 AAK1Q2M2I8 961 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 SLC35G1Q2M3R5 365 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 DENND5AQ6IQ26 1287 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TIGD7Q6NT04 549 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TEX261Q6UWH6 196 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 C5orf46Q6UWT4 87 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 CEP68Q76N32 757 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 THAP5Q7Z6K1 395 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 SLC47A2Q86VL8 602 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 RNF135Q8IUD6 432 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 MPP5Q8N3R9 675 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 RBPMSQ93062 196 aaKnown RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 C18orf25Q96B23 403 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 CDCA5Q96FF9 252 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TEPSINQ96N21 525 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 CPXM1Q96SM3 734 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 RUSC1Q9BVN2 902 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 NUSAP1Q9BXS6 441 aaKnown RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 CCDC90BQ9GZT6 254 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 FAM49AQ9H0Q0 323 aaPredicted RBP9.37□□□□□ -0.91
CLIP1-214ENST00000540539 MMP28Q9H239 520 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 DCSTAMPQ9H295 470 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 LDAHQ9H6V9 325 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 RSAD1Q9HA92 442 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 RRAGCQ9HB90 399 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 GSN-AS1Q9NRJ2 163 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 BARHL2Q9NY43 387 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TRPS1Q9UHF7 1281 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ZNF639Q9UID6 485 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ACSL5Q9ULC5 683 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 PCDHB3Q9Y5E6 796 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 PCDHB12Q9Y5F1 795 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 TEX264Q9Y6I9 313 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 U3KQ87 197 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 MICAL3Q7RTP6 2002 aa9.37□□□□□ -0.91
CLIP1-214ENST00000540539 ATP6AP2A0A1C7CYW4 349 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 FAM92AA1XBS5 289 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 SMLR1H3BR10 107 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 EEF2KO00418 725 aaKnown RBP9.36□□□□□ -0.91
CLIP1-214ENST00000540539 ADAMTS4O75173 837 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 MED26O95402 600 aa9.36□□□□□ -0.91
CLIP1-214ENST00000540539 RNF224P0DH78 156 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms