RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 ACOT13Q9NPJ3 140 aa12.32□□□□□ -0.44
USP3-203ENST00000538686 SLC35C2Q9NQQ7 365 aa12.32□□□□□ -0.44
USP3-203ENST00000538686 DPP3Q9NY33 737 aa12.32□□□□□ -0.44
USP3-203ENST00000538686 BFARQ9NZS9 450 aa12.32□□□□□ -0.44
USP3-203ENST00000538686 NUDT5Q9UKK9 219 aa12.32□□□□□ -0.44
USP3-203ENST00000538686 ORC6Q9Y5N6 252 aa12.32□□□□□ -0.44
USP3-203ENST00000538686 PSAT1Q9Y617 370 aa12.32□□□□□ -0.44
USP3-203ENST00000538686 BTN3A1O00481 513 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ENDOD1O94919 500 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 NDUFB10O96000 172 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 PIK3CBP42338 1070 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 EEFSECP57772 596 aaKnown RBP12.31□□□□□ -0.44
USP3-203ENST00000538686 POU5F1BQ06416 359 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 FAM214AQ32MH5 1076 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 FBXO43Q4G163 708 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ZNF470Q6ECI4 717 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 RBFAQ8N0V3 343 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 TRPM4Q8TD43 1214 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 NEDD4LQ96PU5 975 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 SDHCQ99643 169 aaPredicted RBP12.31□□□□□ -0.44
USP3-203ENST00000538686 PI4K2AQ9BTU6 479 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 HDHD5Q9BXW7 423 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 CATSPERBQ9H7T0 1116 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 CYP3A43Q9HB55 503 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 DYRK4Q9NR20 520 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 PCDHB16Q9NRJ7 776 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ENOPH1Q9UHY7 261 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 RIMKLBQ9ULI2 386 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 PCDHA1Q9Y5I3 950 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 OR2A25A4D2G3 310 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 A8MUA0 341 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 MEIS2O14770 477 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 STAU1O95793 577 aaKnown RBP12.31□□□□□ -0.44
USP3-203ENST00000538686 POLBP06746 335 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 CCNYL3P0C7X3 344 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 RAP2AP10114 183 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ZNF250P15622 560 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ZP3P21754 424 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 CPN2P22792 545 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 CTSKP43235 329 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ARHGDIAP52565 204 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 PER3P56645 1201 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 MYL6P60660 151 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 RBP5P82980 135 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 SCN1BQ07699 218 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ASAH1Q13510 395 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ZNF273Q14593 569 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 CLLU1Q5K131 121 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ATF7IP2Q5U623 682 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 PADI6Q6TGC4 694 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 GDPD1Q8N9F7 314 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 STYXQ8WUJ0 223 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ZNF606Q8WXB4 792 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ST8SIA4Q92187 359 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 SMG7Q92540 1137 aaKnown RBP12.31□□□□□ -0.44
USP3-203ENST00000538686 PTERQ96BW5 349 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 CERS2Q96G23 380 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 RNF145Q96MT1 663 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 WDR11Q9BZH6 1224 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ALG2Q9H553 416 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 TASP1Q9H6P5 420 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 SP110Q9HB58 689 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 C3orf14Q9HBI5 128 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 CYP4F12Q9HCS2 524 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 PAK6Q9NQU5 681 aaPredicted RBP12.31□□□□□ -0.44
USP3-203ENST00000538686 EIF2B3Q9NR50 452 aaKnown RBP12.31□□□□□ -0.44
USP3-203ENST00000538686 CMTM6Q9NX76 183 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 ERVK-18Q9QC07 812 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 MBD2Q9UBB5 411 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 CPNE7Q9UBL6 633 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 SLC23A1Q9UHI7 598 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 TMEM5Q9Y2B1 443 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 PCDHA9Q9Y5H5 950 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 HRH3Q9Y5N1 445 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 FKBP7Q9Y680 259 aa12.31□□□□□ -0.44
USP3-203ENST00000538686 UPK1AO00322 258 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 FZD6O60353 706 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 GMDSO60547 372 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 RPLP0P05388 317 aaKnown RBP12.3□□□□□ -0.44
USP3-203ENST00000538686 ITGAMP11215 1152 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 MTHFD1P11586 935 aaKnown RBP12.3□□□□□ -0.44
USP3-203ENST00000538686 HDCP19113 662 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 SLC6A2P23975 617 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 MAP2K4P45985 399 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 PPP3CCP48454 512 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 LIG4P49917 911 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 CDH13P55290 713 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 DNAJB13P59910 316 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 SSTP61278 116 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 IL1RL1Q01638 556 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 KCNAB2Q13303 367 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 MAB21L1Q13394 359 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 TRIP4Q15650 581 aaPredicted RBP12.3□□□□□ -0.44
USP3-203ENST00000538686 GRK1Q15835 563 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 FAM98BQ52LJ0 330 aaKnown RBP12.3□□□□□ -0.44
USP3-203ENST00000538686 TEX261Q6UWH6 196 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 NPNTQ6UXI9 565 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 RBM23Q86U06 439 aaKnown RBP12.3□□□□□ -0.44
USP3-203ENST00000538686 RASAL3Q86YV0 1011 aa12.3□□□□□ -0.44
USP3-203ENST00000538686 NAT16Q8N8M0 369 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms