RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 RAD23BP54727 409 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 LTBQ06643 244 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 FOXM1Q08050 763 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 PDE1CQ14123 709 aaPredicted RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 CALCRLQ16602 461 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 EIF2S3LQ2VIR3 472 aaKnown RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 AMZ1Q400G9 498 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 PPP6R3Q5H9R7 873 aaPredicted RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 GKAP1Q5VSY0 366 aaPredicted RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 RGMBQ6NW40 437 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 C8orf82Q6P1X6 216 aaPredicted RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 SARM1Q6SZW1 724 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 CREB3L2Q70SY1 520 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 COPS6Q7L5N1 327 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 TICAM1Q8IUC6 712 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 TTC39CQ8N584 583 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 SGCDQ92629 289 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 RND1Q92730 232 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 RRNAD1Q96FB5 475 aaKnown RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 CSF3RQ99062 836 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 SH3GL2Q99962 352 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 SYT17Q9BSW7 474 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 MAK16Q9BXY0 300 aaKnown RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 MUC13Q9H3R2 512 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 C17orf75Q9HAS0 396 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 SCPEP1Q9HB40 452 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 MKKSQ9NPJ1 570 aaPredicted RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 BCCIPQ9P287 314 aaKnown RBP eCLIP3.87□□□□□ -1.79
CD44-219ENST00000525685 DBF4Q9UBU7 674 aaPredicted RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 MALT1Q9UDY8 824 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 SLCO3A1Q9UIG8 710 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 FBXO2Q9UK22 296 aaPredicted RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 ZNF215Q9UL58 517 aaPredicted RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 NFS1Q9Y697 457 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 SESN1Q9Y6P5 492 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 ZBED9Q6R2W3 1325 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 UBN2Q6ZU65 1347 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 ABCC12Q96J65 1359 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 CKAP5Q14008 2032 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 DDX60Q8IY21 1712 aaKnown RBP3.87□□□□□ -1.79
CD44-219ENST00000525685 RIC1Q4ADV7 1423 aa3.87□□□□□ -1.79
CD44-219ENST00000525685 C1orf226A1L170 272 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 ERVV-1B6SEH8 477 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 SOCS6O14544 535 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 WNT9BO14905 357 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 JRKO75564 520 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 EGFP01133 1207 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 SERPINB2P05120 415 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 TGFB3P10600 412 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 FCGR1AP12314 374 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 CDH2P19022 906 aaPredicted RBP3.86□□□□□ -1.79
CD44-219ENST00000525685 MCM3P25205 808 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 ITGB8P26012 769 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 TNFRSF8P28908 595 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 BDKRB2P30411 391 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 PRCPP42785 496 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 DRG2P55039 364 aaKnown RBP3.86□□□□□ -1.79
CD44-219ENST00000525685 CSNK2A1P68400 391 aaPredicted RBP3.86□□□□□ -1.79
CD44-219ENST00000525685 AIMP1Q12904 312 aaKnown RBP3.86□□□□□ -1.79
CD44-219ENST00000525685 GRIK2Q13002 908 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 DHX34Q14147 1143 aaKnown RBP3.86□□□□□ -1.79
CD44-219ENST00000525685 RILPL1Q5EBL4 403 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 CXorf66Q5JRM2 361 aaPredicted RBP3.86□□□□□ -1.79
CD44-219ENST00000525685 GPATCH4Q5T3I0 446 aaKnown RBP3.86□□□□□ -1.79
CD44-219ENST00000525685 HIST2H2BCQ6DN03 193 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 HIST2H2BDQ6DRA6 164 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 PRR5LQ6MZQ0 368 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 DUS1LQ6P1R4 473 aaKnown RBP3.86□□□□□ -1.79
CD44-219ENST00000525685 CLEC4GQ6UXB4 293 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 PQLC2Q6ZP29 291 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 G2E3Q7L622 706 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 CACNA2D4Q7Z3S7 1137 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 ZNF34Q8IZ26 560 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 PGBD5Q8N414 524 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 CSNK2A3Q8NEV1 391 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 ORAI1Q96D31 301 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 RTP4Q96DX8 246 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 PHF21BQ96EK2 531 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 C1orf74Q96LT6 269 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 C3orf30Q96M34 536 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 C1QTNF5Q9BXJ0 243 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 TMX4Q9H1E5 349 aaPredicted RBP3.86□□□□□ -1.79
CD44-219ENST00000525685 SLCO5A1Q9H2Y9 848 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 NOX4Q9NPH5 578 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 SELENONQ9NZV5 590 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 PROCRQ9UNN8 238 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 NIP7Q9Y221 180 aaKnown RBP eCLIP3.86□□□□□ -1.79
CD44-219ENST00000525685 ADAM18Q9Y3Q7 739 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 ADCY9O60503 1353 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 CACNA1SQ13698 1873 aa3.86□□□□□ -1.79
CD44-219ENST00000525685 TRIP12Q14669 1992 aaPredicted RBP3.85□□□□□ -1.79
CD44-219ENST00000525685 A0A0U1RQJ8 604 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 EME2A4GXA9 379 aaPredicted RBP3.85□□□□□ -1.79
CD44-219ENST00000525685 PRSS44E7EML9 344 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 HS3ST1O14792 307 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 HS6ST1O60243 411 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 NDUFS7O75251 213 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 TSPAN9O75954 239 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 DPEP1P16444 411 aa3.85□□□□□ -1.79
CD44-219ENST00000525685 CLCN3P51790 818 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms