RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 OASLQ15646 514 aaKnown RBP11.31□□□□□ -0.6
VCAN-212ENST00000515397 SPACA3Q8IXA5 215 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 LSMEM2Q8N112 164 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 SNIP1Q8TAD8 396 aaKnown RBP11.31□□□□□ -0.6
VCAN-212ENST00000515397 PMEPA1Q969W9 287 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 LIN37Q96GY3 246 aaPredicted RBP11.31□□□□□ -0.6
VCAN-212ENST00000515397 AHCYL2Q96HN2 611 aaKnown RBP11.31□□□□□ -0.6
VCAN-212ENST00000515397 CCDC74BQ96LY2 380 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 ZNF578Q96N58 590 aaPredicted RBP11.31□□□□□ -0.6
VCAN-212ENST00000515397 ALS2CR12Q96Q35 445 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 ARNT2Q9HBZ2 717 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 SMARCAL1Q9NZC9 954 aa11.31□□□□□ -0.6
VCAN-212ENST00000515397 CFAP20Q9Y6A4 193 aaKnown RBP11.31□□□□□ -0.6
VCAN-212ENST00000515397 OR51F1A6NGY5 319 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 DXOO77932 396 aaKnown RBP11.3□□□□□ -0.6
VCAN-212ENST00000515397 CRTAMO95727 393 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 AP2A1O95782 977 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 MSH3P20585 1137 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 STIP1P31948 543 aaKnown RBP11.3□□□□□ -0.6
VCAN-212ENST00000515397 CCKBRP32239 447 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 RPL22P35268 128 aaKnown RBP11.3□□□□□ -0.6
VCAN-212ENST00000515397 GPR3P46089 330 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 FASLGP48023 281 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 LMAN1P49257 510 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 ARSDP51689 593 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 PCBP4P57723 403 aaKnown RBP11.3□□□□□ -0.6
VCAN-212ENST00000515397 TLE3Q04726 772 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 SRSF6Q13247 344 aaKnown RBP11.3□□□□□ -0.6
VCAN-212ENST00000515397 TRIP13Q15645 432 aaPredicted RBP11.3□□□□□ -0.6
VCAN-212ENST00000515397 ZRANB3Q5FWF4 1079 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 LDLRAP1Q5SW96 308 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 ZDHHC20Q5W0Z9 365 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 TAS2R42Q7RTR8 314 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 SLC9B2Q86UD5 537 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 PDZD3Q86UT5 571 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 AMZ2Q86W34 360 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 TRIM48Q8IWZ4 208 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 KLHDC8BQ8IXV7 354 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 LILRA3Q8N6C8 439 aaPredicted RBP11.3□□□□□ -0.6
VCAN-212ENST00000515397 DDHD1Q8NEL9 900 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 USP7Q93009 1102 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 GRAMD1AQ96CP6 724 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 MS4A14Q96JA4 679 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 LRRC40Q9H9A6 602 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 CPNE5Q9HCH3 593 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 SARS2Q9NP81 518 aaKnown RBP11.3□□□□□ -0.6
VCAN-212ENST00000515397 RAB6BQ9NRW1 208 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 THSD1Q9NS62 852 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 OCIAD1Q9NX40 245 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 TRMT1Q9NXH9 659 aaKnown RBP11.3□□□□□ -0.6
VCAN-212ENST00000515397 FOXJ2Q9P0K8 574 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 CRLS1Q9UJA2 301 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 PCDHGA8Q9Y5G5 932 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 SLC30A1Q9Y6M5 507 aa11.3□□□□□ -0.6
VCAN-212ENST00000515397 ADAMTS20P59510 1910 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 IGSF10Q6WRI0 2623 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 ZFC3H1O60293 1989 aaKnown RBP11.29□□□□□ -0.6
VCAN-212ENST00000515397 KIR2DS5A0A0G2JLQ3 304 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 A0A0G2JNG1 304 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 PRR19A6NJB7 356 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 CDRT15L2A8MXV6 281 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 KIR2DS3K7RE56 304 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 SGTAO43765 313 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 PRAMEF10O60809 474 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 PPFIA2O75334 1257 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 VIPP01282 170 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 POLBP06746 335 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 IDSP22304 550 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 MC4RP32245 332 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 CLCNKAP51800 687 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 LIMK2P53671 638 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 ERVPABLB-1P60509 514 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 UBE2IP63279 158 aaKnown RBP11.29□□□□□ -0.6
VCAN-212ENST00000515397 ITGA9Q13797 1035 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 KIR2DS5Q14953 304 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 LONRF2Q1L5Z9 754 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 P3H1Q32P28 736 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 ZNF662Q6ZS27 426 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 ZFAND4Q86XD8 727 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 PIANPQ8IYJ0 282 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 DNAAF3Q8N9W5 541 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 ZNF248Q8NDW4 579 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 SPDYE1Q8NFV5 336 aaPredicted RBP11.29□□□□□ -0.6
VCAN-212ENST00000515397 KCNE4Q8WWG9 221 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 RTP4Q96DX8 246 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 CMKLR1Q99788 373 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 TIMM29Q9BSF4 260 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 KCNF1Q9H3M0 494 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 OGFRQ9NZT2 677 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 SLC2A6Q9UGQ3 507 aa11.29□□□□□ -0.6
VCAN-212ENST00000515397 C9orf172C9J069 976 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 E7EVH7 732 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 TMX2-CTNND1H3BSU7 103 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 PSMD3O43242 534 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 APRTP07741 180 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 ITGA2BP08514 1039 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 FGF3P11487 239 aaPredicted RBP11.28□□□□□ -0.6
VCAN-212ENST00000515397 AMD1P17707 334 aa11.28□□□□□ -0.6
VCAN-212ENST00000515397 XRCC1P18887 633 aaPredicted RBP11.28□□□□□ -0.6
VCAN-212ENST00000515397 GFERP55789 205 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms