RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 AOC1P19801 751 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 UGT1A1P22309 533 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 UGT1A4P22310 534 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 UGT1A3P35503 534 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 UGT1A5P35504 534 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 SPAM1P38567 509 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 RAB14P61106 215 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 HMGCS1Q01581 520 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 CHIT1Q13231 466 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 PCLAFQ15004 111 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 GPAT3Q53EU6 434 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 TMEM63BQ5T3F8 832 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 CRYGNQ8WXF5 182 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 BRI3BPQ8WY22 251 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 SMOQ99835 787 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 EBPLQ9BY08 206 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 AKTIPQ9H8T0 292 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 FBRSL1Q9HCM7 1045 aaKnown RBP12.55□□□□□ -0.4
USP53-209ENST00000514665 THG1LQ9NWX6 298 aaKnown RBP12.55□□□□□ -0.4
USP53-209ENST00000514665 DYTNA2CJ06 578 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.55□□□□□ -0.4
USP53-209ENST00000514665 BCKDKO14874 412 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 ITGA2P17301 1181 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 TPP2P29144 1249 aaPredicted RBP12.55□□□□□ -0.4
USP53-209ENST00000514665 ALDH4A1P30038 563 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 SCNN1AP37088 669 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 BUD31P41223 144 aaPredicted RBP12.55□□□□□ -0.4
USP53-209ENST00000514665 GSTM5P46439 218 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 CARTPTQ16568 116 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 CNPY1Q3B7I2 92 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 SH3D19Q5HYK7 790 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 DDI2Q5TDH0 399 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 MBLAC2Q68D91 279 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 ROPN1LQ96C74 230 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 CDKN2AIPNLQ96HQ2 116 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 DEFB118Q96PH6 123 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 NDEL1Q9GZM8 345 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 FANCEQ9HB96 536 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 ADAM30Q9UKF2 790 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 hCG_2039718K7EN88 272 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 TMCC2O75069 709 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 TNFRSF21O75509 655 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 CXCL14O95715 111 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 ADH1AP07327 375 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 ACVRL1P37023 503 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 IFNGR2P38484 337 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 MAPKAPK2P49137 400 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 SEPHS1P49903 392 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 MLLT6P55198 1093 aaPredicted RBP12.55□□□□□ -0.4
USP53-209ENST00000514665 MADCAM1Q13477 382 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 CDC73Q6P1J9 531 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 KLHL17Q6TDP4 642 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 AHSA2Q719I0 299 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 RELL1Q8IUW5 271 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 RAVER1Q8IY67 606 aaKnown RBP12.55□□□□□ -0.4
USP53-209ENST00000514665 LIX1Q8N485 282 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 FIBCD1Q8N539 461 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 CAPSLQ8WWF8 208 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 BORCS5Q969J3 196 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 PYCR2Q96C36 320 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 HIPK3Q9H422 1215 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 SIRPGQ9P1W8 387 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 ZNF624Q9P2J8 865 aaPredicted RBP12.55□□□□□ -0.4
USP53-209ENST00000514665 GSTK1Q9Y2Q3 226 aa12.55□□□□□ -0.4
USP53-209ENST00000514665 H3BM21 787 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 SLC9A3R1O14745 358 aaPredicted RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 H6PDO95479 791 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 ESR1P03372 595 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 TCF3P15923 654 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 IMPDH1P20839 514 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 CDH3P22223 829 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 CDH5P33151 784 aaPredicted RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 MANFP55145 182 aaKnown RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 CDH4P55283 916 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 DMPKQ09013 629 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 MOGSQ13724 837 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 PTPRCAPQ14761 206 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 KBTBD8Q8NFY9 601 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 OR4A15Q8NGL6 344 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 VANGL1Q8TAA9 524 aaPredicted RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 GPR22Q99680 433 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 FEM1AQ9BSK4 669 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 MAPRE3Q9UPY8 281 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 CPQQ9Y646 472 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 FPGTO14772 594 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 NOBOXO60393 691 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 CXCR2P25025 360 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 NOVP48745 357 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 GALNT18Q6P9A2 607 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 ZNF557Q8N988 423 aaPredicted RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 LEMD2Q8NC56 503 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 XAGE5Q8WWM1 108 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 PRR11Q96HE9 360 aaPredicted RBP12.54□□□□□ -0.4
USP53-209ENST00000514665 TEPSINQ96N21 525 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 DEPDC7Q96QD5 511 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 PKP2Q99959 881 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 AMBNQ9NP70 447 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 NUDT4Q9NZJ9 180 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 OAZ3Q9UMX2 235 aa12.54□□□□□ -0.4
USP53-209ENST00000514665 QSOX1O00391 747 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms