RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 MED27Q6P2C8 311 aa16.39■□□□□ 0.21
PCDHA1-203ENST00000504120 RPTNQ6XPR3 784 aa16.39■□□□□ 0.21
PCDHA1-203ENST00000504120 REM2Q8IYK8 340 aaPredicted RBP16.39■□□□□ 0.21
PCDHA1-203ENST00000504120 PCDHGC4Q9Y5F7 938 aa16.39■□□□□ 0.21
PCDHA1-203ENST00000504120 PLK4O00444 970 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 KLHL18O94889 574 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 IDH3AP50213 366 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 ZNF132P52740 706 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 VARS2Q5ST30 1063 aaKnown RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 PARGQ86W56 976 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 SLC34A3Q8N130 599 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 FAM98AQ8NCA5 519 aaKnown RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 ZNF541Q9H0D2 1346 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 RBM47A0AV96 593 aaKnown RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 BCKDKO14874 412 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 VNN1O95497 513 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 PRPS2P11908 318 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 LMO2P25791 158 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 AQP1P29972 269 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 RBM23Q86U06 439 aaKnown RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 SERPINA9Q86WD7 417 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 ARL10Q8N8L6 244 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 BORCS5Q969J3 196 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 HSD3B7Q9H2F3 369 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 INTS10Q9NVR2 710 aaKnown RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 COMMD9Q9P000 198 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 PRDM4Q9UKN5 801 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 A0A0G2JLL6 359 aaPredicted RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 KLRG2A4D1S0 409 aaPredicted RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 GLTPD2A6NH11 291 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 AGPSO00116 658 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 PGRMC2O15173 223 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 THRBP10828 461 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 TAF1AQ15573 450 aaPredicted RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 PLA2G4EQ3MJ16 856 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 ATP13A5Q4VNC0 1218 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 FAM171BQ6P995 826 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 PRRT2Q7Z6L0 340 aaPredicted RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 FSTL5Q8N475 847 aaPredicted RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 ACSS2Q9NR19 701 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 H3BNX3 289 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 SLC22A2O15244 555 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 PRKAR1AP10644 381 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 GDF10P55107 478 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 HM13Q8TCT9 377 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 CENPNQ96H22 339 aaPredicted RBP16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 SQORQ9Y6N5 450 aa16.38■□□□□ 0.21
PCDHA1-203ENST00000504120 GABRDO14764 452 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 CCL16O15467 120 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 CBFA2T3O75081 653 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 PIGRP01833 764 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 C11orf65Q8NCR3 313 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 VANGL1Q8TAA9 524 aaPredicted RBP16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 PSMG2Q969U7 264 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 COX4I2Q96KJ9 171 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 NR2E1Q9Y466 385 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 FOXO6A8MYZ6 492 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 PSMD11O00231 422 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 TAF4O00268 1085 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 RGS10O43665 173 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 SSNA1O43805 119 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 SPRYD7Q5W111 196 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 FUBP3Q96I24 572 aaKnown RBP eCLIP16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 ATG10Q9H0Y0 220 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 DENND2DQ9H6A0 471 aaPredicted RBP16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 COLEC10Q9Y6Z7 277 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 ABHD14A-ACY1A0A1B0GW23 586 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 MCIDASD6RGH6 385 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 ALOX5P09917 674 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 OMPP47874 163 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 ACLYP53396 1101 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 MYBPC1Q00872 1141 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 BEND5Q7L4P6 421 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 OAFQ86UD1 273 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 CDH24Q86UP0 819 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 FAM124AQ86V42 546 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 MCFD2Q8NI22 146 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 PNPT1Q8TCS8 783 aaKnown RBP16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 FEM1CQ96JP0 617 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 TNKS2Q9H2K2 1166 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 TLE6Q9H808 572 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 CCDC177Q9NQR7 707 aaPredicted RBP16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 PTPRJQ12913 1337 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 TNFRSF11BO00300 401 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 SEPT4O43236 478 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 SCN2BO60939 215 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 C8GP07360 202 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 RPS9P46781 194 aaKnown RBP16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 ASTE1Q2TB18 679 aaPredicted RBP16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 XAGE5Q8WWM1 108 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 NTAN1Q96AB6 310 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 HAPLN3Q96S86 360 aa16.37■□□□□ 0.21
PCDHA1-203ENST00000504120 YJEFN3A6XGL0 299 aa16.36■□□□□ 0.21
PCDHA1-203ENST00000504120 FADS2O95864 444 aaKnown RBP16.36■□□□□ 0.21
PCDHA1-203ENST00000504120 GPD2P43304 727 aa16.36■□□□□ 0.21
PCDHA1-203ENST00000504120 ACTR3P61158 418 aa16.36■□□□□ 0.21
PCDHA1-203ENST00000504120 LARS2Q15031 903 aaKnown RBP16.36■□□□□ 0.21
PCDHA1-203ENST00000504120 ZNF697Q5TEC3 545 aa16.36■□□□□ 0.21
PCDHA1-203ENST00000504120 TMPRSS11AQ6ZMR5 421 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms