RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 SPEF2Q9C093 1822 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 TCRBV7S3A2A0A539 114 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 ZW10O43264 779 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 CDH5P33151 784 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 GPD2P43304 727 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 LGALS3BPQ08380 585 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 IL18R1Q13478 541 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 HERC3Q15034 1050 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 LIX1Q8N485 282 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 IPCEF1Q8WWN9 437 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 TMEM138Q9NPI0 162 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 MBD2Q9UBB5 411 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 NT5C1B-RDH14C9J2C7 533 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 TFECO14948 347 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 ECDO95905 644 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 RPIAP49247 311 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 IRF9Q00978 393 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 GNA12Q03113 381 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 ALKBH2Q6NS38 261 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 AHSA2Q719I0 299 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 PEG10Q86TG7 708 aaKnown RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 MPP5Q8N3R9 675 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 TCF25Q9BQ70 676 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 EVLQ9UI08 416 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 ISM1B1AKI9 464 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 PGRMC2O15173 223 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 TREHO43280 583 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 ADH1AP07327 375 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 OGNP20774 298 aaKnown RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 CDH4P55283 916 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 CBX2Q14781 532 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 CHPFQ8IZ52 775 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 RERGQ96A58 199 aaPredicted RBP16.29■□□□□ 0.2
COL7A1-210ENST00000487017 SEC14L3Q9UDX4 400 aa16.29■□□□□ 0.2
COL7A1-210ENST00000487017 ZNF536O15090 1300 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 ATG13O75143 517 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 PRAMEF1O95521 474 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 LMO2P25791 158 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 IL1R2P27930 398 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 RAB25P57735 213 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 LIN54Q6MZP7 749 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 MCMBPQ9BTE3 642 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 INSIG1O15503 277 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 H6PDO95479 791 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 AMD1P17707 334 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 IL10RBQ08334 325 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 ACAT2Q9BWD1 397 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 MAGEH1Q9H213 219 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 FZD8Q9H461 694 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 BCAS3Q9H6U6 928 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 CACNA1FO60840 1977 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 GABRR2P28476 465 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 SSR2P43308 183 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 BICRALQ6AI39 1079 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 OR10A6Q8NH74 314 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 ZNF384Q8TF68 577 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 EXO5Q9H790 373 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 OXSMQ9NWU1 459 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 GULP1Q9UBP9 304 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 EIF2B4Q9UI10 523 aaKnown RBP16.28■□□□□ 0.2
COL7A1-210ENST00000487017 MRPS23Q9Y3D9 190 aaKnown RBP16.28■□□□□ 0.2
COL7A1-210ENST00000487017 E7ENX8 843 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 TBX10O75333 385 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 ASLP04424 464 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 SULT1C3Q6IMI6 304 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 INTS7Q9NVH2 962 aaKnown RBP16.28■□□□□ 0.2
COL7A1-210ENST00000487017 TLL2Q9Y6L7 1015 aa16.28■□□□□ 0.2
COL7A1-210ENST00000487017 FADS2P1A8MWK0 482 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 TPD52L2O43399 206 aaKnown RBP16.27■□□□□ 0.2
COL7A1-210ENST00000487017 HKDC1Q2TB90 917 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 MPPE1Q53F39 396 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 PITRM1Q5JRX3 1037 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 FAM46CQ5VWP2 391 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 SIDT2Q8NBJ9 832 aaKnown RBP16.27■□□□□ 0.2
COL7A1-210ENST00000487017 BRSK1Q8TDC3 778 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 CLEC4CQ8WTT0 213 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 AIF1LQ9BQI0 150 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 LMAN2LQ9H0V9 348 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 CFAP97Q9P2B7 532 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 CCNKO75909 580 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 ANXA4P09525 319 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-210ENST00000487017 CMASQ8NFW8 434 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-210ENST00000487017 OR8D1Q8WZ84 308 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 PDCD10Q9BUL8 212 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 EXD2Q9NVH0 621 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 ZFP37Q9Y6Q3 630 aaPredicted RBP16.27■□□□□ 0.2
COL7A1-210ENST00000487017 CXCR6O00574 342 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 PCSK2P16519 638 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 SEPHS1P49903 392 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 TSC22D1Q15714 1073 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 C11orf65Q8NCR3 313 aa16.27■□□□□ 0.2
COL7A1-210ENST00000487017 CNOT6Q9ULM6 557 aaKnown RBP16.27■□□□□ 0.2
COL7A1-210ENST00000487017 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.27■□□□□ 0.19
COL7A1-210ENST00000487017 H3BM21 787 aa16.27■□□□□ 0.19
COL7A1-210ENST00000487017 GABRDO14764 452 aa16.27■□□□□ 0.19
COL7A1-210ENST00000487017 ITM2AO43736 263 aa16.27■□□□□ 0.19
COL7A1-210ENST00000487017 PRPS2P11908 318 aa16.27■□□□□ 0.19
COL7A1-210ENST00000487017 COL6A1P12109 1028 aa16.27■□□□□ 0.19
COL7A1-210ENST00000487017 MAGP20916 626 aa16.27■□□□□ 0.19
COL7A1-210ENST00000487017 PSMA1P25786 263 aaKnown RBP16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms