RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CACNA2D3Q8IZS8 1091 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 KIRREL3Q8IZU9 778 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 TMEM151AQ8N4L1 468 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 ZBTB2Q8N680 514 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 RPLP0P6Q8NHW5 317 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 GANCQ8TET4 914 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 PPP4R1Q8TF05 950 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 ANKRD49Q8WVL7 239 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 KIAA1191Q96A73 305 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 ZNF514Q96K75 400 aaPredicted RBP12.67□□□□□ -0.38
VPS13D-205ENST00000473099 NELL2Q99435 816 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 BOCQ9BWV1 1114 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 MKRN2Q9H000 416 aaKnown RBP12.67□□□□□ -0.38
VPS13D-205ENST00000473099 CD248Q9HCU0 757 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 CPSF2Q9P2I0 782 aaKnown RBP12.67□□□□□ -0.38
VPS13D-205ENST00000473099 WNT16Q9UBV4 365 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 PCM1Q15154 2024 aa12.67□□□□□ -0.38
VPS13D-205ENST00000473099 ANTXRLA6NF34 631 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 FADS2P1A8MWK0 482 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 CHURC1-FNTBB4DL54 471 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 PLK4O00444 970 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 SNX3O60493 162 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 KERAO60938 352 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 DNAJC6O75061 913 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 ATG13O75143 517 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 TAS2R38P59533 333 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 NFKB2Q00653 900 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 B4GALNT1Q00973 533 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 TFF2Q03403 129 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 BST1Q10588 318 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 PLEKHS1Q5SXH7 462 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 RAET1GQ6H3X3 334 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 ADAMTSL4Q6UY14 1074 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 OTOAQ7RTW8 1153 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 PIWIL4Q7Z3Z4 852 aaKnown RBP12.66□□□□□ -0.38
VPS13D-205ENST00000473099 SPATA21Q7Z572 469 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 RAB44Q7Z6P3 723 aaPredicted RBP12.66□□□□□ -0.38
VPS13D-205ENST00000473099 ADAMTSL2Q86TH1 951 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 CRLF3Q8IUI8 442 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 MYO1HQ8N1T3 1032 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 CLDN19Q8N6F1 224 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 SIDT2Q8NBJ9 832 aaKnown RBP12.66□□□□□ -0.38
VPS13D-205ENST00000473099 CCDC197Q8NCU1 140 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 OR6Y1Q8NGX8 325 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 ASB12Q8WXK4 309 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 LINGO1Q96FE5 620 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 SIKE1Q9BRV8 207 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 TRIM55Q9BYV6 548 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 SARS2Q9NP81 518 aaKnown RBP12.66□□□□□ -0.38
VPS13D-205ENST00000473099 POLMQ9NP87 494 aaPredicted RBP12.66□□□□□ -0.38
VPS13D-205ENST00000473099 ARHGEF3Q9NR81 526 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 TMPRSS11EQ9UL52 423 aa12.66□□□□□ -0.38
VPS13D-205ENST00000473099 SHISA7A6NL88 538 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 ZBTB14O43829 449 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 VEGFDO43915 354 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 NPHS1O60500 1241 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 IPO13O94829 963 aaKnown RBP12.65□□□□□ -0.38
VPS13D-205ENST00000473099 TRIM16O95361 564 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 SBK3P0C264 359 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 COL9A1P20849 921 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 CA5AP35218 305 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 GMPRP36959 345 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 MAPK9P45984 424 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 SLC1A6P48664 564 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 CCR3P51677 355 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 DGKEP52429 567 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 HK2P52789 917 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 PGGT1BP53609 377 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 OCRLQ01968 901 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 GTF2H3Q13889 308 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 NEK10Q6ZWH5 1172 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 CPNE9Q8IYJ1 553 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 GIMAP7Q8NHV1 300 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 SEC16BQ96JE7 1060 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 ELAC2Q9BQ52 826 aaKnown RBP12.65□□□□□ -0.38
VPS13D-205ENST00000473099 ALG9Q9H6U8 611 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 SLCO1B3Q9NPD5 702 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 NCKIPSDQ9NZQ3 722 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 KLHL14Q9P2G3 628 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 RNF112Q9ULX5 631 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 NDRG2Q9UN36 371 aaKnown RBP12.65□□□□□ -0.38
VPS13D-205ENST00000473099 COQ6Q9Y2Z9 468 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 PRSS21Q9Y6M0 314 aa12.65□□□□□ -0.38
VPS13D-205ENST00000473099 IGLON5A6NGN9 336 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 A8MT66 165 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 GPR89AB7ZAQ6 455 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 BTN3A1O00481 513 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 EBAG9O00559 213 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 DLX3O60479 287 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 TSPAN12O95859 305 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 GPR89BP0CG08 455 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 MPC1LP0DKB6 136 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 CHRNB1P11230 501 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 AOAHP28039 575 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 PRLHRP49683 370 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 ADPRHP54922 357 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 STARD6P59095 220 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 ABCE1P61221 599 aaKnown RBP12.64□□□□□ -0.39
VPS13D-205ENST00000473099 ZP2Q05996 745 aa12.64□□□□□ -0.39
VPS13D-205ENST00000473099 TMEM115Q12893 351 aaPredicted RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms