RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 OR52L1Q8NGH7 329 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 CCM2Q9BSQ5 444 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 UBR3Q6ZT12 1888 aa11.85□□□□□ -0.51
PTPRF-205ENST00000414879 A0A0J9YYE9 177 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 CLDN4O14493 209 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 TRBC1P01850 177 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 IL6P05231 212 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 LINC00032P0C843 101 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 VAV1P15498 845 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 MYL12AP19105 171 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 NOS3P29474 1203 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 NAE1Q13564 534 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 FGD3Q5JSP0 725 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 TTC29Q8NA56 475 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 PHOSPHO2Q8TCD6 241 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 SLC29A3Q9BZD2 475 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 BTRCQ9Y297 605 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 K7EPI3 171 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 AP3D1O14617 1153 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 SLC1A2P43004 574 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 CENPAP49450 140 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 ATXN1P54253 815 aaKnown RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 ITGA1P56199 1179 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 DAB2P98082 770 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 SLC10A7Q0GE19 358 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 DLG1Q12959 904 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 HEPACAMQ14CZ8 416 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 HERC3Q15034 1050 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 ARL13AQ5H913 290 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 RNF19BQ6ZMZ0 732 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 EIF3MQ7L2H7 374 aaKnown RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 CFAP206Q8IYR0 622 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 C8orf59Q8N0T1 100 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 PGAM4Q8N0Y7 254 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 TRIB3Q96RU7 358 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 TDRD1Q9BXT4 1180 aaKnown RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 PNPOQ9NVS9 261 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 KLHL3Q9UH77 587 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 CCDC162PA2VCL2 907 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 HAS3O00219 553 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 IMPDH1P20839 514 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 PRKCHP24723 683 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 MAGEA10P43363 369 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 POLR2JP52435 117 aaKnown RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 OGDHQ02218 1023 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 KCNC3Q14003 757 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 DCAF12L1Q5VU92 463 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 TXNDC8Q6A555 127 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 C22orf39Q6P5X5 142 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 TMC5Q6UXY8 1006 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 CIR1Q86X95 450 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 FSTL5Q8N475 847 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 POLR1BQ9H9Y6 1135 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 PCDH12Q9NPG4 1184 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 SNX10Q9Y5X0 201 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 LEFTY2O00292 366 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 HIST1H2ABP04908 130 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 EPORP19235 508 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 PTX3P26022 381 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 VARSP26640 1264 aaKnown RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 CDH13P55290 713 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 FASTKD3Q14CZ7 662 aaKnown RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 C1orf220Q5T0J3 134 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 CCNYL2Q5T2Q4 361 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 HFE2Q6ZVN8 426 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 HIST3H2AQ7L7L0 130 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 CLNKQ7Z7G1 428 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 HDDC3Q8N4P3 179 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 ZNF248Q8NDW4 579 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 HIST1H2ACQ93077 130 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 RANBP9Q96S59 729 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 GATA5Q9BWX5 397 aaPredicted RBP11.84□□□□□ -0.51
PTPRF-205ENST00000414879 WDR26Q9H7D7 661 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 SLCO1B3Q9NPD5 702 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 OR10H1Q9Y4A9 318 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 TEX264Q9Y6I9 313 aa11.84□□□□□ -0.51
PTPRF-205ENST00000414879 LIN7AO14910 233 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-205ENST00000414879 SUV39H1O43463 412 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 KERAO60938 352 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 FAM20BO75063 409 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 TIMP1P01033 207 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 MANFP55145 182 aaKnown RBP11.83□□□□□ -0.52
PTPRF-205ENST00000414879 DPYSQ14117 519 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 ITPRIPL2Q3MIP1 535 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 SIRPB2Q5JXA9 342 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 KLHDC10Q6PID8 442 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 CCDC81Q6ZN84 652 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 TMPRSS11BQ86T26 416 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 FBXW8Q8N3Y1 598 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 UTP15Q8TED0 518 aaKnown RBP11.83□□□□□ -0.52
PTPRF-205ENST00000414879 LRRN4Q8WUT4 740 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 ABTB1Q969K4 478 aaPredicted RBP11.83□□□□□ -0.52
PTPRF-205ENST00000414879 RCN3Q96D15 328 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 ZFYVE19Q96K21 471 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 SLC38A2Q96QD8 506 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 CCNB1IP1Q9NPC3 277 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 GKN1Q9NS71 199 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 UBXN8O00124 270 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 TBX18O95935 607 aa11.83□□□□□ -0.52
PTPRF-205ENST00000414879 GDI1P31150 447 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms