RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 RABGEF1Q9UJ41 708 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 DNAJC16Q9Y2G8 782 aa21.38■■□□□ 1.01
CLN3-207ENST00000395653 KLHL33A6NCF5 533 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 OR51F1A6NGY5 319 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 OR5K4A6NMS3 321 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 SNX2O60749 519 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 AVILO75366 819 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 POP7O75817 140 aaKnown RBP21.37■■□□□ 1.01
CLN3-207ENST00000395653 GOT2P00505 430 aaKnown RBP21.37■■□□□ 1.01
CLN3-207ENST00000395653 PRSS56P0CW18 603 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 FASLGP48023 281 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 IYDQ6PHW0 289 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 CCNI2Q6ZMN8 369 aaPredicted RBP21.37■■□□□ 1.01
CLN3-207ENST00000395653 MICALCLQ6ZW33 695 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 DET1Q7L5Y6 550 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 ZNF438Q7Z4V0 828 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 PCGF5Q86SE9 256 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 JAMLQ86YT9 394 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 OR4L1Q8NH43 312 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 SLC37A2Q8TED4 501 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 LINC00615Q96LM1 132 aaPredicted RBP21.37■■□□□ 1.01
CLN3-207ENST00000395653 SOX13Q9UN79 622 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 CLCA2Q9UQC9 943 aa21.37■■□□□ 1.01
CLN3-207ENST00000395653 KIR2DS5A0A0G2JLQ3 304 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 A0A0G2JNG1 304 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 KIR2DS3K7RE56 304 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 SGTAO43765 313 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 TCEA3O75764 348 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 MT-CO3P00414 261 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 ATP1B2P14415 290 aaPredicted RBP21.36■■□□□ 1.01
CLN3-207ENST00000395653 JUPP14923 745 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 IDSP22304 550 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 MAGEA3P43357 314 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 PRLHRP49683 370 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 CLDN6P56747 220 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 BIRC2Q13490 618 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 ITIH4Q14624 930 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 KIR2DS5Q14953 304 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 NR1D2Q14995 579 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 DBN1Q16643 649 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 WASH2PQ6VEQ5 465 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 HOOK3Q86VS8 718 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 DCBLD1Q8N8Z6 715 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 SPATA4Q8NEY3 305 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 OR6P1Q8NGX9 317 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 CCDC97Q96F63 343 aaPredicted RBP21.36■■□□□ 1.01
CLN3-207ENST00000395653 WASH6PQ9NQA3 447 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 PRDM8Q9NQV8 689 aa21.36■■□□□ 1.01
CLN3-207ENST00000395653 ASXL3Q9C0F0 2248 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 RHPN2P1A8MT19 583 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 GOLGA8MH3BSY2 632 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 IVDP26440 423 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 NMBRP28336 390 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 NSG1P42857 185 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 FASTKD1Q53R41 847 aaKnown RBP21.35■■□□□ 1.01
CLN3-207ENST00000395653 AGAP9Q5VTM2 703 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 LYPLAL1Q5VWZ2 237 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 ABRAXAS1Q6UWZ7 409 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 CERS6Q6ZMG9 384 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 SPRED1Q7Z699 444 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 BEND7Q8N7W2 519 aaPredicted RBP21.35■■□□□ 1.01
CLN3-207ENST00000395653 AVL9Q8NBF6 648 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 KRT12Q99456 494 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 TTC1Q99614 292 aa21.35■■□□□ 1.01
CLN3-207ENST00000395653 SARS2Q9NP81 518 aaKnown RBP21.35■■□□□ 1.01
CLN3-207ENST00000395653 MAGEB16A2A368 324 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 FAM149AA5PLN7 773 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 MGAT4DA6NG13 374 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 SDR42E2A6NKP2 422 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 NTN3O00634 580 aaPredicted RBP21.34■■□□□ 1.01
CLN3-207ENST00000395653 TTI1O43156 1089 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 ZW10O43264 779 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 GPR3P46089 330 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 AARS2Q5JTZ9 985 aaKnown RBP21.34■■□□□ 1.01
CLN3-207ENST00000395653 PACS1Q6VY07 963 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 CCNJLQ8IV13 435 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 OR2L2Q8NH16 312 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 MFSD3Q96ES6 412 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 STN1Q9H668 368 aaKnown RBP21.34■■□□□ 1.01
CLN3-207ENST00000395653 SAMD15Q9P1V8 674 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 RP1P56715 2156 aa21.34■■□□□ 1.01
CLN3-207ENST00000395653 PDZK1P1A8MUH7 402 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 QSOX1O00391 747 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 PPM1DO15297 605 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 AP2A2O94973 939 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 TUBB4AP04350 444 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 RPLP0P05388 317 aaKnown RBP21.33■■□□□ 1.01
CLN3-207ENST00000395653 PPARGP37231 505 aaPredicted RBP21.33■■□□□ 1.01
CLN3-207ENST00000395653 TARDBPQ13148 414 aaKnown RBP eCLIP21.33■■□□□ 1.01
CLN3-207ENST00000395653 SPIDRQ14159 915 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 CHCHD2P9Q5T1J5 151 aaPredicted RBP21.33■■□□□ 1.01
CLN3-207ENST00000395653 IZUMO3Q5VZ72 239 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 SLC9B2Q86UD5 537 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 NAT14Q8WUY8 206 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 DEPDC7Q96QD5 511 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 LRRN3Q9H3W5 708 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 ANAPC5Q9UJX4 755 aa21.33■■□□□ 1.01
CLN3-207ENST00000395653 TRBV23OR9-2A0A075B6M9 112 aa21.32■■□□□ 1
CLN3-207ENST00000395653 FAM237BA0A1B0GVD1 139 aa21.32■■□□□ 1
CLN3-207ENST00000395653 A0A1W2PQM1 296 aa21.32■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms