RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 TLR1Q15399 786 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 SLC1A5Q15758 541 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 ZNF557Q8N988 423 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-201ENST00000375820 LRTOMTQ8WZ04 291 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 EURLQ9NYK6 297 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 ZNF224Q9NZL3 707 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 MRPS33Q9Y291 106 aaKnown RBP13.59□□□□□ -0.23
COL4A1-201ENST00000375820 DHX15O43143 795 aaKnown RBP13.59□□□□□ -0.23
COL4A1-201ENST00000375820 MYCLP1P12525 358 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-201ENST00000375820 BMP6P22004 513 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 GTF2H2Q13888 395 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 GANABQ14697 944 aaKnown RBP13.59□□□□□ -0.23
COL4A1-201ENST00000375820 GTF2H2CQ6P1K8 395 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 TMPRSS11AQ6ZMR5 421 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 XYLT1Q86Y38 959 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 OR7D4Q8NG98 312 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 RDH11Q8TC12 318 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 HMCESQ96FZ2 354 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 MFSD14AQ96MC6 490 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 CSPG4P5Q96PW8 444 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 DNAJC11Q9NVH1 559 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 MAGEL2Q9UJ55 1249 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 PRAMEF1O95521 474 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 BBS12Q6ZW61 710 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 NAT14Q8WUY8 206 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 ALG3Q92685 438 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 FEM1AQ9BSK4 669 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 UCKL1Q9NWZ5 548 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 UBIAD1Q9Y5Z9 338 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 WNT7AO00755 349 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 UGT2B11O75310 529 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 CCNKO75909 580 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 MT-CYBP00156 380 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-201ENST00000375820 GNPDA1P46926 289 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 USP50Q70EL3 339 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-201ENST00000375820 A8MUA0 341 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 GNRH1P01148 92 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 UROSP10746 265 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 NMBRP28336 390 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 CDKL1Q00532 357 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 SMARCB1Q12824 385 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 KLF10Q13118 480 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 COL9A2Q14055 689 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-201ENST00000375820 AMZ1Q400G9 498 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 ATXN7L2Q5T6C5 722 aaPredicted RBP13.59□□□□□ -0.23
COL4A1-201ENST00000375820 EGFLAMQ63HQ2 1017 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 HOMEZQ8IX15 550 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 OR10H4Q8NGA5 316 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 SHC3Q92529 594 aa13.59□□□□□ -0.23
COL4A1-201ENST00000375820 PRKCIP41743 596 aa13.58□□□□□ -0.23
COL4A1-201ENST00000375820 MAPK12P53778 367 aa13.58□□□□□ -0.23
COL4A1-201ENST00000375820 PLA2G16P53816 162 aa13.58□□□□□ -0.23
COL4A1-201ENST00000375820 VLDLRP98155 873 aa13.58□□□□□ -0.23
COL4A1-201ENST00000375820 CHAF1BQ13112 559 aa13.58□□□□□ -0.23
COL4A1-201ENST00000375820 BRD7Q9NPI1 651 aa13.58□□□□□ -0.23
COL4A1-201ENST00000375820 CDH22Q9UJ99 828 aa13.58□□□□□ -0.23
COL4A1-201ENST00000375820 SORCS3Q9UPU3 1222 aa13.58□□□□□ -0.23
COL4A1-201ENST00000375820 NRXN1Q9ULB1 1477 aa13.58□□□□□ -0.23
COL4A1-201ENST00000375820 ZNF208O43345 1280 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 IPO13O94829 963 aaKnown RBP13.58□□□□□ -0.24
COL4A1-201ENST00000375820 KIR3DL1P43629 444 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 GRM3Q14832 879 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 LARS2Q15031 903 aaKnown RBP13.58□□□□□ -0.24
COL4A1-201ENST00000375820 KCTD8Q6ZWB6 473 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 GALNT13Q8IUC8 556 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 LPGAT1Q92604 370 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 MNTQ99583 582 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 S100A14Q9HCY8 104 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 IFT46Q9NQC8 304 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 TREHO43280 583 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 CST3P01034 146 aaPredicted RBP13.58□□□□□ -0.24
COL4A1-201ENST00000375820 ABHD2P08910 425 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 IL12BP29460 328 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 RPIAP49247 311 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 RAB2AP61019 212 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 HYAL2Q12891 473 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 DLG1Q12959 904 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 SLC13A2Q13183 592 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 ERICH5Q6P6B1 374 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 PQLC1Q8N2U9 271 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 PIWIL1Q96J94 861 aaKnown RBP13.58□□□□□ -0.24
COL4A1-201ENST00000375820 IDI2Q9BXS1 227 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 GNEQ9Y223 722 aaKnown RBP13.58□□□□□ -0.24
COL4A1-201ENST00000375820 TPD52L2O43399 206 aaKnown RBP13.58□□□□□ -0.24
COL4A1-201ENST00000375820 SPATA31C1P0DKV0 1188 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 CREMQ03060 361 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 CPA6Q8N4T0 437 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 MFSD3Q96ES6 412 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 EIF2B4Q9UI10 523 aaKnown RBP13.58□□□□□ -0.24
COL4A1-201ENST00000375820 CABYRO75952 493 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 CLDN9O95484 217 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 PKMP14618 531 aaKnown RBP13.58□□□□□ -0.24
COL4A1-201ENST00000375820 ITGB5P18084 799 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 LIPEQ05469 1076 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 DCST1Q5T197 706 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 TRABD2AQ86V40 505 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 MON1AQ86VX9 555 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 PEX5LQ8IYB4 626 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 COQ8BQ96D53 544 aa13.58□□□□□ -0.24
COL4A1-201ENST00000375820 FTHL17Q9BXU8 183 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms