RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ACTR3P61158 418 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF697Q5TEC3 545 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 REP15Q6BDI9 236 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 TMPRSS11BQ86T26 416 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 ZZZ3Q8IYH5 903 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 OR8D1Q8WZ84 308 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 CLIP3Q96DZ5 547 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 GMLQ99445 158 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 SEMA3GQ9NS98 782 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 ING3Q9NXR8 418 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 EVLQ9UI08 416 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 PADI3Q9ULW8 664 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 MRPS33Q9Y291 106 aaKnown RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 A0A1B0GVM2 712 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 GSAPA4D1B5 854 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 FAM86C2PA6NEL3 165 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 TCAF2A6NFQ2 919 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 CCL22O00626 93 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 PLOD3O60568 738 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 PRPS2P11908 318 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 CORO1AP31146 461 aaKnown RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 POU5F1Q01860 360 aaKnown RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 NOL9Q5SY16 702 aaKnown RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 EGFLAMQ63HQ2 1017 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 BICRALQ6AI39 1079 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 FIBCD1Q8N539 461 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 ZBTB2Q8N680 514 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 NIPA2Q8N8Q9 360 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 CLEC4DQ8WXI8 215 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 ERLEC1Q96DZ1 483 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 DNAJC1Q96KC8 554 aaKnown RBP11.33□□□□□ -0.6
PTPRF-203ENST00000372407 MCMBPQ9BTE3 642 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 PCDHGC4Q9Y5F7 938 aa11.33□□□□□ -0.6
PTPRF-203ENST00000372407 URB1O60287 2271 aaKnown RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 C9JVG2 144 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 TREHO43280 583 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 ESR1P03372 595 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 COL6A1P12109 1028 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 GPD2P43304 727 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PRMT2P55345 433 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 TAS2R41P59536 307 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 MBTD1Q05BQ5 628 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 ITGA7Q13683 1181 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 MPPE1Q53F39 396 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 CWF19L1Q69YN2 538 aaKnown RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 CES5AQ6NT32 575 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 DAW1Q8N136 415 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF248Q8NDW4 579 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 RNASE11Q8TAA1 199 aaKnown RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PNPT1Q8TCS8 783 aaKnown RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 ADAMTS15Q8TE58 950 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 C10orf82Q8WW14 230 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PCED1BQ96HM7 432 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 HTATIP2Q9BUP3 242 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 ATG10Q9H0Y0 220 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 GULP1Q9UBP9 304 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 COQ6Q9Y2Z9 468 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 MYBPHLA2RUH7 354 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 SLC22A2O15244 555 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 OR4F21O95013 312 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 IFNGP01579 166 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PTPN5P54829 565 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 DPYSL2Q16555 572 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 ZNF554Q86TJ5 538 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PDPRQ8NCN5 879 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 BRSK1Q8TDC3 778 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 LRTOMTQ8WZ04 291 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 AZIN2Q96A70 460 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 HBEGFQ99075 208 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 NUSAP1Q9BXS6 441 aaKnown RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 CNOT6Q9ULM6 557 aaKnown RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PLIN4Q96Q06 1357 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 SAGE2PA6NJ88 616 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PSMD11O00231 422 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 TNFRSF11BO00300 401 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 FPGTO14772 594 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 AOC2O75106 756 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 ATG13O75143 517 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PRAMEF1O95521 474 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 IFNW1P05000 195 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 ANXA4P09525 319 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 NDST2P52849 883 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 SLC18A1P54219 525 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 C2orf80Q0P641 193 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 CCNYL2Q5T2Q4 361 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 FAM156AQ8NDB6 213 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PIK3C3Q8NEB9 887 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 SRFBP1Q8NEF9 429 aaKnown RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 FAR1Q8WVX9 515 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 TRIT1Q9H3H1 467 aaKnown RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 FZD8Q9H461 694 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 RPRD1BQ9NQG5 326 aaKnown RBP11.32□□□□□ -0.6
PTPRF-203ENST00000372407 SOHLH2Q9NX45 425 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 PTTG2Q9NZH5 202 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 HMGXB4Q9UGU5 601 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 SLC7A8Q9UHI5 535 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 FBXW11Q9UKB1 542 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 BTAF1O14981 1849 aa11.32□□□□□ -0.6
PTPRF-203ENST00000372407 FADS2P1A8MWK0 482 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms