RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 GTF2H2Q13888 395 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 GTF2H2CQ6P1K8 395 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 GK5Q6ZS86 529 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 C17orf50Q8WW18 174 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 FCRL5Q96RD9 977 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 MFSD1Q9H3U5 465 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 STARD7Q9NQZ5 370 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 RAB23Q9ULC3 237 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 AP3D1O14617 1153 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 GSTT2BP0CG30 244 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 FOXN2P32314 431 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 CCNFP41002 786 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 PRR5P85299 388 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 SEMA3AQ14563 771 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 MED22Q15528 200 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 EIPR1Q53HC9 387 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 RUNDC3AQ59EK9 446 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 OLFML1Q6UWY5 402 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 KCTD8Q6ZWB6 473 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 SMYD1Q8NB12 490 aa10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 KIAA1522Q9P206 1035 aaPredicted RBP10.2□□□□□ -0.78
CCDC88A-202ENST00000336838 H3BNH8 94 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 CDC25CP30307 473 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 SPAM1P38567 509 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 RORCP51449 518 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 USP41Q3LFD5 358 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 KLHDC10Q6PID8 442 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 HPS1Q92902 700 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 TMEM209Q96SK2 561 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 OSBPL2Q9H1P3 480 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 WDR70Q9NW82 654 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 SNED1Q8TER0 1413 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 E9PAM4 449 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 CLPXO76031 633 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 DBTP11182 482 aaKnown RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 ERP29P30040 261 aaKnown RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 MC4RP32245 332 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 OAFQ86UD1 273 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 ITFG2Q969R8 447 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 PDZD7Q9H5P4 517 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 PDP1Q9P0J1 537 aaPredicted RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 TNFSF9P41273 254 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 WDR4P57081 412 aaKnown RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 FBXL19Q6PCT2 694 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 TTLQ8NG68 377 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 DQX1Q8TE96 717 aaKnown RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 ANKRA2Q9H9E1 313 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 FBXW11Q9UKB1 542 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 NWD2Q9ULI1 1742 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 BCORQ6W2J9 1755 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 PITPNM1O00562 1244 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 NSG1P42857 185 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 GABARAPL2P60520 117 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 GRIK2Q13002 908 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC13A3Q8WWT9 602 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF514Q96K75 400 aaPredicted RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 YME1L1Q96TA2 773 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 GPATCH1Q9BRR8 931 aaKnown RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 CRISPLD1Q9H336 500 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 PIH1D1Q9NWS0 290 aaKnown RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 RPL36Q9Y3U8 105 aaKnown RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF780BQ9Y6R6 833 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 TCRBV7S2A1N4TA0A589 114 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 C1QTNF3-AMACRE9PGA6 284 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 AGR2O95994 175 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 VEGFAP15692 232 aaPredicted RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 ZSWIM7Q19AV6 140 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 CHPFQ8IZ52 775 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 LPGAT1Q92604 370 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 AIF1LQ9BQI0 150 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 GATA5Q9BWX5 397 aaPredicted RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 ZNF490Q9ULM2 529 aaPredicted RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 MRPS33Q9Y291 106 aaKnown RBP10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 PCDHGA10Q9Y5H3 936 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 CNTNAP1P78357 1384 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 FAM240BA0A1B0GVZ2 78 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 SPIN4Q56A73 249 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 PERM1Q5SV97 790 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 OXR1Q8N573 874 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 C12orf42Q96LP6 360 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 TBC1D14Q9P2M4 693 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 SEC14L3Q9UDX4 400 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 PRORSD1PA6NEY8 169 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 ETS2P15036 469 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 GSTM3P21266 225 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 HUNKP57058 714 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 RAB2AP61019 212 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 CYP4F3Q08477 520 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 AGMOQ6ZNB7 445 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 AKT1S1Q96B36 256 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 SLC22A4Q9H015 551 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 MED28Q9H204 178 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 PTGFRNQ9P2B2 879 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 UNCXA6NJT0 531 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 RHDQ02161 417 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 ATP13A5Q4VNC0 1218 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 FAM131AQ6UXB0 335 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 NSMCE3Q96MG7 304 aa10.19□□□□□ -0.78
CCDC88A-202ENST00000336838 KHDRBS3O75525 346 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-202ENST00000336838 DNAJA1P31689 397 aaKnown RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms