RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 C1orf109Q9NX04 203 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 ANKMY1Q9P2S6 941 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 WASF3Q9UPY6 502 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SLCO1B1Q9Y6L6 691 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 FABP12A6NFH5 140 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 AGAP5A6NIR3 686 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CES2O00748 559 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 KLF8O95600 359 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RAB6AP20340 208 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CYP2A7P20853 494 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 NMT1P30419 496 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF84P51523 738 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 AIF1P55008 147 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CDH15P55291 814 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 DLG4P78352 724 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SPIBQ01892 262 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 GK3PQ14409 553 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 GPR176Q14439 515 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 LPCAT4Q643R3 524 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RNF43Q68DV7 783 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 DENND1BQ6P3S1 775 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TEX261Q6UWH6 196 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 C16orf59Q7L2K0 433 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SPATA19Q7Z5L4 167 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 LZTR1Q8N653 840 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 IPMKQ8NFU5 416 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PABPC5Q96DU9 382 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 KCNC2Q96PR1 638 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TMEM237Q96Q45 408 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CPXM1Q96SM3 734 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 NIFKQ9BYG3 293 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PLCXD1Q9NUJ7 323 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RIPK3Q9Y572 518 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 HEBP2Q9Y5Z4 205 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 U3KQ87 197 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PLXNC1O60486 1568 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 ANKRD36BQ8N2N9 1353 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 OR6C74A6NCV1 312 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 EEF2KO00418 725 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC22A2O15244 555 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 VPS26AO75436 327 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TOX4O94842 621 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 F11P03951 625 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 HOXC12P31275 282 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 CSTF2P33240 577 aaKnown RBP eCLIP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 AQP5P55064 265 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SEC61A1P61619 476 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TCP10Q12799 353 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 TMEM132DQ14C87 1099 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 NTRK3Q16288 839 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SYT6Q5T7P8 510 aaPredicted RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 BAGE3Q86Y29 109 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 BAGE2Q86Y30 109 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 MMAAQ8IVH4 418 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC41A1Q8IVJ1 513 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 RTKN2Q8IZC4 609 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 PROM2Q8N271 834 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 NFKBIDQ8NI38 313 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 INTS12Q96CB8 462 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SIDT1Q9NXL6 827 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 STK32BQ9NY57 414 aa7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 SRPRBQ9Y5M8 271 aaKnown RBP7.58□□□□□ -1.2
LIMCH1-201ENST00000313860 A0A0J9YVX5 310 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 A0A1W2PS29 197 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 A6NHS1 94 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 FAM86B1E9PN63 330 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 H3BSH0 61 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 C2CD2LO14523 706 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 OR10H3O60404 316 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 REM1O75628 298 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 IL7P13232 177 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 BAMBIQ13145 260 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 ANKDD1AQ495B1 522 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 NLRC3Q7RTR2 1065 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 APCDD1Q8J025 514 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 LSMEM2Q8N112 164 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 DNAJB3Q8WWF6 145 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC25A23Q9BV35 468 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 TPT1P8Q9HAU6 139 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 PIH1D1Q9NWS0 290 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 VNN3Q9NY84 501 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 COPZ2Q9P299 210 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 DNAJC16Q9Y2G8 782 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 GDAQ9Y2T3 454 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 ABCC2Q92887 1545 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF335Q9H4Z2 1342 aaPredicted RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 A0A0A0MRY4 1105 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 FAM181BA6NEQ2 426 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 BBIP1A8MTZ0 92 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 GTPBP1O00178 669 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 AGPAT2O15120 278 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CDH16O75309 829 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 KAT7O95251 611 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 SNRNP70P08621 437 aaKnown RBP7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 CYP21A2P08686 494 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 LINGO3P0C6S8 592 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 BMP7P18075 431 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 RPS6KB1P23443 525 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 HOXC9P31274 260 aa7.57□□□□□ -1.2
LIMCH1-201ENST00000313860 OR1G1P47890 313 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms