RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ACAP2Q15057 778 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 KCNA10Q16322 511 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 BICRALQ6AI39 1079 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 PTCHD4Q6ZW05 846 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 FAM47BQ8NA70 645 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 ADCY4Q8NFM4 1077 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 ERLEC1Q96DZ1 483 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 ACSS2Q9NR19 701 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 SLC45A1Q9Y2W3 748 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 KHDRBS3O75525 346 aaKnown RBP18.97■□□□□ 0.63
UPF1-201ENST00000262803 SEC24AO95486 1093 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 PRR5P85299 388 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 SAPCD2Q86UD0 394 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 CPSF7Q8N684 471 aaKnown RBP18.97■□□□□ 0.63
UPF1-201ENST00000262803 DSN1Q9H410 356 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 CAPN8A6NHC0 703 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 TIPRLO75663 272 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 SEMA3DO95025 777 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 RPIAP49247 311 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 POM121L1PQ3SYA9 428 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 PARGQ86W56 976 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 TMEM192Q8IY95 271 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 APOBEC3GQ9HC16 384 aaKnown RBP18.97■□□□□ 0.63
UPF1-201ENST00000262803 CDH22Q9UJ99 828 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 LRATO95237 230 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 ESR1P03372 595 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 UGT2B4P06133 528 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 LAMP2P13473 410 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 ATP5A1P25705 553 aaKnown RBP18.97■□□□□ 0.63
UPF1-201ENST00000262803 UBR7Q8N806 425 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 HERVK_113Q902F9 699 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 COX4I2Q96KJ9 171 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 ARHGEF4Q9NR80 690 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 COPS7AQ9UBW8 275 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 SEC14L3Q9UDX4 400 aa18.97■□□□□ 0.63
UPF1-201ENST00000262803 NPEPPSL1A6NEC2 478 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 EIPR1Q53HC9 387 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 RANBP3LQ86VV4 465 aaPredicted RBP18.96■□□□□ 0.63
UPF1-201ENST00000262803 DQX1Q8TE96 717 aaKnown RBP18.96■□□□□ 0.63
UPF1-201ENST00000262803 SLC22A18Q96BI1 424 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 MFSD3Q96ES6 412 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 DENND2DQ9H6A0 471 aaPredicted RBP18.96■□□□□ 0.63
UPF1-201ENST00000262803 IGKV6D-41A0A0C4DH26 115 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 IRAK2O43187 625 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 HNF4AP41235 474 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 LIMK2P53671 638 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 TAS2R50P59544 299 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 OR4K2Q8NGD2 314 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 KCTD13Q8WZ19 329 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 MCMBPQ9BTE3 642 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 ABCG8Q9H221 673 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 NOL11Q9H8H0 719 aaKnown RBP18.96■□□□□ 0.63
UPF1-201ENST00000262803 TCAF1Q9Y4C2 921 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 CCL16O15467 120 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 INSIG1O15503 277 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 COL6A1P12109 1028 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 ARL13AQ5H913 290 aaPredicted RBP18.96■□□□□ 0.63
UPF1-201ENST00000262803 VWA5B1Q5TIE3 1220 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 ESRP1Q6NXG1 681 aaKnown RBP18.96■□□□□ 0.63
UPF1-201ENST00000262803 RHBDF2Q6PJF5 856 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 TMPRSS11BQ86T26 416 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 SLC43A3Q8NBI5 491 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 PDCD10Q9BUL8 212 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 PLGRKTQ9HBL7 147 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 INTS10Q9NVR2 710 aaKnown RBP18.96■□□□□ 0.63
UPF1-201ENST00000262803 ATXN10Q9UBB4 475 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 MCM8Q9UJA3 840 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 ING4Q9UNL4 249 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 CREB1P16220 341 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 PRKD1Q15139 912 aaPredicted RBP18.96■□□□□ 0.63
UPF1-201ENST00000262803 SNX20Q7Z614 316 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 CFAP52Q8N1V2 620 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 HCAR2Q8TDS4 363 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 RAD51AP1Q96B01 352 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 ZNF599Q96NL3 588 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 Q9Y3F1 56 aa18.96■□□□□ 0.63
UPF1-201ENST00000262803 PTGER3P43115 390 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 MASP1P48740 699 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 ASTE1Q2TB18 679 aaPredicted RBP18.95■□□□□ 0.62
UPF1-201ENST00000262803 CCDC80Q76M96 950 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 FAM124AQ86V42 546 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 DCAKDQ8WVC6 231 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 SCELO95171 688 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 UROSP10746 265 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 CDH3P22223 829 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 DGKGP49619 791 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 MYBPC3Q14896 1274 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 TAF8Q7Z7C8 310 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 PJA1Q8NG27 643 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 NEK7Q8TDX7 302 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 TOR4AQ9NXH8 423 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 PLIN4Q96Q06 1357 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 PLIN3O60664 434 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 DBTP11182 482 aaKnown RBP18.95■□□□□ 0.62
UPF1-201ENST00000262803 PERM1Q5SV97 790 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 DRICH1Q6PGQ1 229 aaPredicted RBP18.95■□□□□ 0.62
UPF1-201ENST00000262803 OR14C36Q8NHC7 312 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 PIH1D2Q8WWB5 315 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 TMEM175Q9BSA9 504 aa18.95■□□□□ 0.62
UPF1-201ENST00000262803 GRIN2DO15399 1336 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms