RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TRIM6Q9C030 488 aaPredicted RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 SLC25A18Q9H1K4 315 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 NOD2Q9HC29 1040 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 RIC8AQ9NPQ8 531 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 WASH6PQ9NQA3 447 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 HINT3Q9NQE9 182 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 ATAD3AQ9NVI7 634 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 PPP1R14DQ9NXH3 145 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 ALKBH4Q9NXW9 302 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 RRN3Q9NYV6 651 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KCND2Q9NZV8 630 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 MPP6Q9NZW5 540 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 KLHL9Q9P2J3 617 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 PGAP2Q9UHJ9 254 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 FBXO9Q9UK97 447 aaPredicted RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 INTS6Q9UL03 887 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 SARDHQ9UL12 918 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 MKLN1Q9UL63 735 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 ACSL5Q9ULC5 683 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 TBX20Q9UMR3 447 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 NAALADL1Q9UQQ1 740 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 AMDHD2Q9Y303 409 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 LRRFIP2Q9Y608 721 aaKnown RBP0.43□□□□□ -2.34
VPS35-212ENST00000640313 CLIC4Q9Y696 253 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 CYP46A1Q9Y6A2 500 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 COMMD10Q9Y6G5 202 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 PRAG1Q86YV5 1406 aa0.43□□□□□ -2.34
VPS35-212ENST00000640313 PTPRCP08575 1304 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 IGLV7-46A0A075B6I9 117 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 TEX13CA0A0J9YWL9 993 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 TEX13DA0A0J9YY54 714 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 ZCWPW2A0A1B0GU75 182 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 A0A1W2PPR1 153 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 A0A1W2PRG0 241 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 FEZF1A0PJY2 475 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 TYW5A2RUC4 315 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 TMEM8BA6NDV4 472 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 RRN3P2A6NIE6 340 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SRRM4A7MD48 611 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 A8MZ25 164 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 AKR1B15C9JRZ8 316 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 USP17L23D6RBM5 183 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SLCO1B7G3V0H7 640 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SNAP23O00161 211 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 MAP2K7O14733 419 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 TNPO2O14787 897 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 EIF3DO15371 548 aaKnown RBP eCLIP0.42□□□□□ -2.34
VPS35-212ENST00000640313 SEC14L5O43304 696 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ANP32CO43423 234 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CTSVO60911 334 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 WDR1O75083 606 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PEX14O75381 377 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PDE9AO76083 593 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 GCNT3O95395 438 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 MOCS3O95396 460 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 MLYCDO95822 493 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PYGLP06737 847 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 FAM106CPP0CH98 169 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PCNAP12004 261 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 HSD3B1P14060 373 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CAPN2P17655 700 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 DDX5P17844 614 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 UGT1A1P22309 533 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 UBA1P22314 1058 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 POU1F1P28069 291 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ABCD3P28288 659 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ACADLP28330 430 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 TM4SF1P30408 202 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 BDKRB2P30411 391 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 HOXC9P31274 260 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 STX2P32856 288 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CPOXP36551 454 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PGM1P36871 562 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 PBX3P40426 434 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 TMPOP42166 694 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 PIP4K2AP48426 406 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 HARS2P49590 506 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 MMP15P51511 669 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 F2RL1P55085 397 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ISL1P61371 349 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CSNK2A1P68400 391 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 OLR1P78380 273 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 POU5F1Q01860 360 aaKnown RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 PPARDQ03181 441 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 COX10Q12887 443 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 BIRC2Q13490 618 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 OLIG2Q13516 323 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 NAE1Q13564 534 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 NEDD9Q14511 834 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 CTF1Q16619 201 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 NFIL3Q16649 462 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 HIST2H2ACQ16777 129 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 ASTE1Q2TB18 679 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 EDRF1Q3B7T1 1238 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 ZC2HC1CQ53FD0 456 aaPredicted RBP0.42□□□□□ -2.34
VPS35-212ENST00000640313 SLC45A4Q5BKX6 768 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 SIRPB2Q5JXA9 342 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 C6orf141Q5SZD1 244 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 NSUN5P2Q63ZY6 315 aa0.42□□□□□ -2.34
VPS35-212ENST00000640313 C18orf63Q68DL7 685 aa0.42□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms