RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 NDC80O14777 642 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 VEGFDO43915 354 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 CDK14O94921 469 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 GPR89BP0CG08 455 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 ZNF8P17098 575 aaPredicted RBP17.87■□□□□ 0.45
CLN3-239ENST00000628023 MSH3P20585 1137 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 ARSDP51689 593 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 CACNG1Q06432 222 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 MORF4L2Q15014 288 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 AFTPHQ6ULP2 937 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 ADGRG6Q86SQ4 1221 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 CAND1Q86VP6 1230 aaKnown RBP17.87■□□□□ 0.45
CLN3-239ENST00000628023 TRAPPC5Q8IUR0 188 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 OR13J1Q8NGT2 312 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 OR6P1Q8NGX9 317 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 OR4C6Q8NH72 309 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 PEX13Q92968 403 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 HDAC10Q969S8 669 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 DCUN1D1Q96GG9 259 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 ZNF778Q96MU6 729 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 TRNAU1APQ9NX07 287 aaKnown RBP17.87■□□□□ 0.45
CLN3-239ENST00000628023 TMPRSS11EQ9UL52 423 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 UTP11Q9Y3A2 253 aaKnown RBP17.87■□□□□ 0.45
CLN3-239ENST00000628023 PRKAB1Q9Y478 270 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 MAD1L1Q9Y6D9 718 aa17.87■□□□□ 0.45
CLN3-239ENST00000628023 CCDC162PA2VCL2 907 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 SDR42E2A6NKP2 422 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 CFAP99D6REC4 459 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 SMAPO00193 183 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 TRIM38O00635 465 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 GRID2O43424 1007 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 NUAK1O60285 661 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 DNAJC6O75061 913 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 FUCA1P04066 466 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 RALBP11234 206 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 TMEM115Q12893 351 aaPredicted RBP17.86■□□□□ 0.45
CLN3-239ENST00000628023 GPR33Q49SQ1 333 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 KHDC1Q4VXA5 237 aaKnown RBP17.86■□□□□ 0.45
CLN3-239ENST00000628023 PYCR3Q53H96 274 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 DNAJC21Q5F1R6 531 aaKnown RBP17.86■□□□□ 0.45
CLN3-239ENST00000628023 C8orf74Q6P047 294 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 NXPE1Q8N323 547 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 SDR16C5Q8N3Y7 309 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 OTUD6BQ8N6M0 293 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 BBOF1Q8ND07 529 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 SCARF2Q96GP6 870 aaPredicted RBP17.86■□□□□ 0.45
CLN3-239ENST00000628023 RAB17Q9H0T7 212 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 DPH5Q9H2P9 285 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 MRM3Q9HC36 420 aaKnown RBP17.86■□□□□ 0.45
CLN3-239ENST00000628023 EVA1BQ9NVM1 165 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 ANAPC5Q9UJX4 755 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 SOX13Q9UN79 622 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 SNX24Q9Y343 169 aa17.86■□□□□ 0.45
CLN3-239ENST00000628023 CTAGE15A4D2H0 777 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 FAM149AA5PLN7 773 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 OR51F1A6NGY5 319 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 TPP1O14773 563 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 YY2O15391 372 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 SIGLEC6O43699 453 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 RFPL3O75679 317 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 SEC31AO94979 1220 aaKnown RBP17.85■□□□□ 0.45
CLN3-239ENST00000628023 APC2O95996 2303 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 GOT2P00505 430 aaKnown RBP17.85■□□□□ 0.45
CLN3-239ENST00000628023 CTAGE8P0CG41 777 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 ACP5P13686 325 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 JUPP14923 745 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 PAMP19021 973 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 IVDP26440 423 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 ITGA8P53708 1063 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 DAB2P98082 770 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 CYP4F3Q08477 520 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 CALCOCO2Q13137 446 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 LRP8Q14114 963 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 PLA2G4EQ3MJ16 856 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 ARMC3Q5W041 872 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 ZCCHC8Q6NZY4 707 aaKnown RBP17.85■□□□□ 0.45
CLN3-239ENST00000628023 SLC30A9Q6PML9 568 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 C19orf48Q6RUI8 117 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 CHST15Q7LFX5 561 aaPredicted RBP17.85■□□□□ 0.45
CLN3-239ENST00000628023 CTAGE6Q86UF2 777 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 LRRTM4Q86VH4 590 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 CTAGE4Q8IX94 777 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 MPP5Q8N3R9 675 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 FAM46DQ8NEK8 389 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 CCL4L1Q8NHW4 92 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 GLMNQ92990 594 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 COPS8Q99627 209 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 ERP44Q9BS26 406 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 KIFC1Q9BW19 673 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 SIRPGQ9P1W8 387 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 GPR34Q9UPC5 381 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 RAXQ9Y2V3 346 aa17.85■□□□□ 0.45
CLN3-239ENST00000628023 ATRXP46100 2492 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 COL5A1P20908 1838 aaPredicted RBP17.84■□□□□ 0.45
CLN3-239ENST00000628023 B4DGG1 531 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 PSMA3P25788 255 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 ACRV1P26436 265 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 AK4P27144 223 aaPredicted RBP17.84■□□□□ 0.45
CLN3-239ENST00000628023 NMBRP28336 390 aa17.84■□□□□ 0.45
CLN3-239ENST00000628023 CA5AP35218 305 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms