RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 LYVE1Q9Y5Y7 322 aa5.07□□□□□ -1.6
NUP88-213ENST00000576862 TCF20Q9UGU0 1960 aaKnown RBP5.07□□□□□ -1.6
NUP88-213ENST00000576862 ZCWPW2A0A1B0GU75 182 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 MAP2K7O14733 419 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 PLPP2O43688 288 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 WISP2O76076 250 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 CRYAAP02489 173 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 CETPP11597 493 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 ANXA7P20073 488 aaKnown RBP5.06□□□□□ -1.6
NUP88-213ENST00000576862 EEF1A1P68104 462 aaKnown RBP5.06□□□□□ -1.6
NUP88-213ENST00000576862 TFAP4Q01664 338 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 SPOCK1Q08629 439 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 PCGF3Q3KNV8 242 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 RAB6CQ53S08 254 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 STPG1Q5TH74 334 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 EEF1A1P5Q5VTE0 462 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 TMEM198Q66K66 360 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 ACSM2BQ68CK6 577 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 KIAA0930Q6ICG6 404 aaPredicted RBP5.06□□□□□ -1.6
NUP88-213ENST00000576862 OR7E24Q6IFN5 339 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 GDPD4Q6W3E5 623 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 ZNF704Q6ZNC4 412 aaPredicted RBP5.06□□□□□ -1.6
NUP88-213ENST00000576862 HACE1Q8IYU2 909 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 SLC38A9Q8NBW4 561 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 DNAAF4Q8WXU2 420 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 POMGNT1Q8WZA1 660 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 NEURL2Q9BR09 285 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 TRMT61BQ9BVS5 477 aaKnown RBP5.06□□□□□ -1.6
NUP88-213ENST00000576862 MAF1Q9H063 256 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 RAB6CQ9H0N0 254 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 ZHX3Q9H4I2 956 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 KAT14Q9H8E8 782 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 KLHL9Q9P2J3 617 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 TMEM184BQ9Y519 407 aaPredicted RBP5.06□□□□□ -1.6
NUP88-213ENST00000576862 FHOD3Q2V2M9 1422 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 PRAG1Q86YV5 1406 aa5.06□□□□□ -1.6
NUP88-213ENST00000576862 ITIH6Q6UXX5 1313 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 TNFSF12-TNFSF13A0A0A6YY99 330 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 A0A0B4J293 547 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 C5orf60A6NFR6 353 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 MYO1GB0I1T2 1018 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 P2RY10O00398 339 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 CAPN9O14815 690 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 EIF3DO15371 548 aaKnown RBP eCLIP5.05□□□□□ -1.6
NUP88-213ENST00000576862 IGKV3-20P01619 116 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 GABRB1P18505 474 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 HADHAP40939 763 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 FMO5P49326 533 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 PRAMEP78395 509 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 SIM2Q14190 667 aaPredicted RBP5.05□□□□□ -1.6
NUP88-213ENST00000576862 ZSCAN23Q3MJ62 389 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 FAM171BQ6P995 826 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 ZNF852Q6ZMS4 543 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 MARK2Q7KZI7 788 aaKnown RBP5.05□□□□□ -1.6
NUP88-213ENST00000576862 ZNF329Q86UD4 541 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 CNPY4Q8N129 248 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 LMNTD1Q8N9Z9 388 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 OR52I2Q8NH67 350 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 UTP15Q8TED0 518 aaKnown RBP5.05□□□□□ -1.6
NUP88-213ENST00000576862 SCFD2Q8WU76 684 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 GFI1Q99684 422 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 CHCHD6Q9BRQ6 235 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 LRRC1Q9BTT6 524 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 POLR3CQ9BUI4 534 aaPredicted RBP5.05□□□□□ -1.6
NUP88-213ENST00000576862 PLK3Q9H4B4 646 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 SH2D4AQ9H788 454 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 SNAPC4Q5SXM2 1469 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 CUL7Q14999 1698 aa5.05□□□□□ -1.6
NUP88-213ENST00000576862 ADAMTS12P58397 1594 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 OR5K3A6NET4 321 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 SMAD9O15198 467 aaKnown RBP5.04□□□□□ -1.6
NUP88-213ENST00000576862 OGG1O15527 345 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 SH3BP5O60239 455 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 HIST1H2ABP04908 130 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 HIST1H2ADP20671 130 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 HRH2P25021 359 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 GARSP41250 739 aaKnown RBP5.04□□□□□ -1.6
NUP88-213ENST00000576862 ARCN1P48444 511 aaKnown RBP5.04□□□□□ -1.6
NUP88-213ENST00000576862 GPR143P51810 404 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 GEMIN4P57678 1058 aaKnown RBP5.04□□□□□ -1.6
NUP88-213ENST00000576862 RPL24P83731 157 aaKnown RBP5.04□□□□□ -1.6
NUP88-213ENST00000576862 LRMPQ12912 555 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 ACCSLQ4AC99 568 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 KCTD8Q6ZWB6 473 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 CHST9Q7L1S5 443 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 HIST3H2AQ7L7L0 130 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 CCDC190Q86UF4 302 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 NFE4Q86UQ8 179 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 PM20D2Q8IYS1 436 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 EMC1Q8N766 993 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 TMEM255BQ8WV15 326 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 GAD1Q99259 594 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 SEMA3CQ99985 751 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 TMEM39BQ9GZU3 492 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 LRMDAQ9H2I8 198 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 FKRPQ9H9S5 495 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 EIF2B3Q9NR50 452 aaKnown RBP5.04□□□□□ -1.6
NUP88-213ENST00000576862 TCP11L1Q9NUJ3 509 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 B3GALT5Q9Y2C3 310 aa5.04□□□□□ -1.6
NUP88-213ENST00000576862 SESN1Q9Y6P5 492 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms