RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SPASTQ9UBP0 616 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 ZNHIT2Q9UHR6 403 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 GNPTGQ9UJJ9 305 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 FBXO5Q9UKT4 447 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 CORO1CQ9ULV4 474 aaPredicted RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 SLC17A4Q9Y2C5 497 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 IKBKGQ9Y6K9 419 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 DGKBQ9Y6T7 804 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 PCM1Q15154 2024 aa9.13□□□□□ -0.95
LDLR-210ENST00000559340 ASCC3Q8N3C0 2202 aaKnown RBP9.13□□□□□ -0.95
LDLR-210ENST00000559340 IGLV3-16A0A075B6K0 115 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 PRSS38A1L453 326 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 NEMP2A6NFY4 417 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 OR51F1A6NGY5 319 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 PCNX2A6NKB5 2137 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 GRID2O43424 1007 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 FTH1P02794 183 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 ESR1P03372 595 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 CEACAM5P06731 702 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 ABHD2P08910 425 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 ERVK-10P10266 1014 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 JUNDP17535 347 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 RPS3P23396 243 aaKnown RBP eCLIP9.12□□□□□ -0.953e-8■■□□□ 12
LDLR-210ENST00000559340 LEPRP48357 1165 aaKnown RBP9.12□□□□□ -0.95
LDLR-210ENST00000559340 RXRGP48443 463 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 HK3P52790 923 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 ADARP55265 1226 aaKnown RBP9.12□□□□□ -0.95
LDLR-210ENST00000559340 VSNL1P62760 191 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 LRP8Q14114 963 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 FZD2Q14332 565 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 PUM1Q14671 1186 aaKnown RBP eCLIP9.12□□□□□ -0.95
LDLR-210ENST00000559340 ELOCQ15369 112 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 CSRP2Q16527 193 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 DBN1Q16643 649 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 ZNF423Q2M1K9 1284 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 TYSND1Q2T9J0 566 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 KIF19Q2TAC6 998 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 KLHL38Q2WGJ6 581 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 PLA2G2CQ5R387 149 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 TEDDM1Q5T9Z0 273 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 LGSNQ5TDP6 509 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 ZNF470Q6ECI4 717 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 PTRHD1Q6GMV3 140 aaKnown RBP9.12□□□□□ -0.95
LDLR-210ENST00000559340 UGT3A1Q6NUS8 523 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 TMEM220Q6QAJ8 160 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 CAPN12Q6ZSI9 719 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 TAOK1Q7L7X3 1001 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 RD3Q7Z3Z2 195 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 ADGRG6Q86SQ4 1221 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 LRRTM4Q86VH4 590 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 CNTN4Q8IWV2 1026 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 CTAGE3PQ8IX95 158 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 PHACTR4Q8IZ21 702 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 PELI3Q8N2H9 469 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 FSTL5Q8N475 847 aaPredicted RBP9.12□□□□□ -0.95
LDLR-210ENST00000559340 C2CD4AQ8NCU7 369 aaPredicted RBP9.12□□□□□ -0.95
LDLR-210ENST00000559340 MYRIPQ8NFW9 859 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 FBF1Q8TES7 1133 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 SCARF2Q96GP6 870 aaPredicted RBP9.12□□□□□ -0.95
LDLR-210ENST00000559340 ELF4Q99607 663 aaPredicted RBP9.12□□□□□ -0.95
LDLR-210ENST00000559340 CPNE1Q99829 537 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 LGR4Q9BXB1 951 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 FUT8Q9BYC5 575 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 GSDMCQ9BYG8 508 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 CARS2Q9HA77 564 aaKnown RBP9.12□□□□□ -0.95
LDLR-210ENST00000559340 PPCSQ9HAB8 311 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 CYP4F12Q9HCS2 524 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 ARGLU1Q9NWB6 273 aaPredicted RBP9.12□□□□□ -0.95
LDLR-210ENST00000559340 TRNAU1APQ9NX07 287 aaKnown RBP9.12□□□□□ -0.95
LDLR-210ENST00000559340 DNAJC28Q9NX36 388 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 ATXN10Q9UBB4 475 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 DOLKQ9UPQ8 538 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 TMEM98Q9Y2Y6 226 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 GPSM3Q9Y4H4 160 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 PCDH15Q96QU1 1955 aa9.12□□□□□ -0.95
LDLR-210ENST00000559340 EP300Q09472 2414 aaPredicted RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 SPTBN4Q9H254 2564 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 C17orf113A0A1B0GUU1 675 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 TCRBV9S1A1TA0A576 114 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 UBA6A0AVT1 1052 aaPredicted RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 TMEM202A6NGA9 273 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 FAM159BA6NKW6 160 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 GOLGA8KD6RF30 607 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 GOLGA8TH3BQL2 631 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 CHUKO15111 745 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 ACSL3O95573 720 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 S1PR4O95977 384 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 CSF2P04141 144 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 ZNF883P0CG24 379 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 PKMP14618 531 aaKnown RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 NME1P15531 152 aaKnown RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 ZNF8P17098 575 aaPredicted RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 ARNTP27540 789 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 GNPDA1P46926 289 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 CD151P48509 253 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 CDKN1CP49918 316 aaPredicted RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 CCT8P50990 548 aa9.11□□□□□ -0.95
LDLR-210ENST00000559340 CSE1LP55060 971 aaKnown RBP9.11□□□□□ -0.95
LDLR-210ENST00000559340 GPX6P59796 221 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms