RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 AKT1P31749 480 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 SLC1A2P43004 574 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 GNPDA1P46926 289 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 HK3P52790 923 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 MPP1Q00013 466 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 PPARDQ03181 441 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 BNIP3Q12983 259 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 THOC5Q13769 683 aaKnown RBP12.66□□□□□ -0.38
SHMT2-227ENST00000557269 CSRP2Q16527 193 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 TYSND1Q2T9J0 566 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 PYCR3Q53H96 274 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 TEDDM1Q5T9Z0 273 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 ZNF470Q6ECI4 717 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 CRTC3Q6UUV7 619 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 CERS6Q6ZMG9 384 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 CILP2Q8IUL8 1156 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 SPNS2Q8IVW8 549 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 PHACTR4Q8IZ21 702 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 OTUD6BQ8N6M0 293 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 BEND7Q8N7W2 519 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-227ENST00000557269 CCL4L1Q8NHW4 92 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 ELF4Q99607 663 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-227ENST00000557269 GTPBP2Q9BX10 602 aaKnown RBP12.66□□□□□ -0.38
SHMT2-227ENST00000557269 TSPYL1Q9H0U9 437 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 TMEM168Q9H0V1 697 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 EPB41L4BQ9H329 900 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 GAREM1Q9H706 876 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 VPS37BQ9H9H4 285 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 CARS2Q9HA77 564 aaKnown RBP12.66□□□□□ -0.38
SHMT2-227ENST00000557269 PPANQ9NQ55 473 aaKnown RBP12.66□□□□□ -0.38
SHMT2-227ENST00000557269 FBXO6Q9NRD1 293 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-227ENST00000557269 VPS18Q9P253 973 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 SLC23A2Q9UGH3 650 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 RAB21Q9UL25 225 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 TP53BP1Q12888 1972 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-227ENST00000557269 LRP4O75096 1905 aa12.66□□□□□ -0.38
SHMT2-227ENST00000557269 PI4KAP42356 2102 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 A0A1B0GTQ1 180 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 GRID2O43424 1007 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 HAUS5O94927 633 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 RASGRP1O95267 797 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 ACSL3O95573 720 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 GSTA2P09210 222 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 ATP1B2P14415 290 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-227ENST00000557269 JUNDP17535 347 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 MSH3P20585 1137 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 OGNP20774 298 aaKnown RBP12.65□□□□□ -0.38
SHMT2-227ENST00000557269 ABCG1P45844 678 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 MGAT5Q09328 741 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 C1orf61Q13536 156 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 ITIH4Q14624 930 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 EFTUD2Q15029 972 aaKnown RBP eCLIP12.65□□□□□ -0.385e-8■■■■■ 50.3
SHMT2-227ENST00000557269 LYPLAL1Q5VWZ2 237 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 MRNIPQ6NTE8 343 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 TMEM220Q6QAJ8 160 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 PACS1Q6VY07 963 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 C11orf96Q7Z7L8 435 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 SDCCAG8Q86SQ7 713 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-227ENST00000557269 CNTN4Q8IWV2 1026 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 C2CD4AQ8NCU7 369 aaPredicted RBP12.65□□□□□ -0.38
SHMT2-227ENST00000557269 FBF1Q8TES7 1133 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 LPGAT1Q92604 370 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.65□□□□□ -0.38
SHMT2-227ENST00000557269 DCUN1D1Q96GG9 259 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 FAM167BQ9BTA0 163 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 LRRC61Q9BV99 259 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 CLPBQ9H078 707 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 P2RY12Q9H244 342 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 UCKL1Q9NWZ5 548 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 ZNHIT2Q9UHR6 403 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 FBXO5Q9UKT4 447 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 CRYL1Q9Y2S2 319 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 GPSM3Q9Y4H4 160 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 PSAT1Q9Y617 370 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 DGKBQ9Y6T7 804 aa12.65□□□□□ -0.38
SHMT2-227ENST00000557269 OTOGLQ3ZCN5 2332 aa12.65□□□□□ -0.39
SHMT2-227ENST00000557269 FAM159BA6NKW6 160 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 IQCF5A8MTL0 148 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 CDX4O14627 284 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-227ENST00000557269 LRP3O75074 770 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 NDUFS3O75489 264 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 TNFP01375 233 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 AHSGP02765 367 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 SYPP08247 313 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 PMLP29590 882 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 RXRGP48443 463 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 TTPAP49638 278 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 PMS2P54278 862 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 SLMAPQ14BN4 828 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 PLA2G4EQ3MJ16 856 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 AARS2Q5JTZ9 985 aaKnown RBP12.64□□□□□ -0.39
SHMT2-227ENST00000557269 CTSL3PQ5NE16 218 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 ZNF549Q6P9A3 640 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 CNSTQ6PJW8 725 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 XKR5Q6UX68 686 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 PRR23CQ6ZRP0 262 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 CEP128Q6ZU80 1094 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 CYS1Q717R9 158 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 KANSL1Q7Z3B3 1105 aa12.64□□□□□ -0.39
SHMT2-227ENST00000557269 NRROSQ86YC3 692 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms