RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 SNPHO15079 494 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 CASC3O15234 703 aaKnown RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 PPM1DO15297 605 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 GPR39O43194 453 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 ZW10O43264 779 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 B4GAT1O43505 415 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 KIF5CO60282 957 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 DXOO77932 396 aaKnown RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 F3P13726 295 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 ETS1P14921 441 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 ZNF7P17097 686 aaPredicted RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 CCKBRP32239 447 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 RPL22P35268 128 aaKnown RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 LSSP48449 732 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 CYP4F3Q08477 520 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 DMPKQ09013 629 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 CDH17Q12864 832 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 SQSTM1Q13501 440 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 GTF2H3Q13889 308 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 KIR2DS5Q14953 304 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 GPR33Q49SQ1 333 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 CRTC3Q6UUV7 619 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 WASH2PQ6VEQ5 465 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 SNX20Q7Z614 316 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 SLC35F6Q8N357 371 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 TAB3Q8N5C8 712 aaPredicted RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 AVL9Q8NBF6 648 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 GDAP1Q8TB36 358 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 STYXQ8WUJ0 223 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 ULK4Q96C45 1275 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 ZNF514Q96K75 400 aaPredicted RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 TTC25Q96NG3 672 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 ASB8Q9H765 288 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 SARS2Q9NP81 518 aaKnown RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 WASH6PQ9NQA3 447 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 EIF2B3Q9NR50 452 aaKnown RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 KLC4Q9NSK0 619 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 NLE1Q9NVX2 485 aaPredicted RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 SLC23A2Q9UGH3 650 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 RIMKLBQ9ULI2 386 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 PCDHGA8Q9Y5G5 932 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 DNMT3AQ9Y6K1 912 aaPredicted RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 URB1O60287 2271 aaKnown RBP11.7□□□□□ -0.54
YBX3-217ENST00000546164 UNC13CQ8NB66 2214 aa11.7□□□□□ -0.54
YBX3-217ENST00000546164 MYLKQ15746 1914 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 TRBV5-4A0A0C4DH59 114 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 KLHL33A6NCF5 533 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 E7EVH7 732 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 CES2O00748 559 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 APRTP07741 180 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 ZSCAN5DPP0CG00 497 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 TPH1P17752 444 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 VCLP18206 1134 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 ITGALP20701 1170 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 MLLT3P42568 568 aaPredicted RBP11.69□□□□□ -0.54
YBX3-217ENST00000546164 CTSCP53634 463 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 ZFP36L1Q07352 338 aaKnown RBP11.69□□□□□ -0.54
YBX3-217ENST00000546164 EIF3IQ13347 325 aaKnown RBP11.69□□□□□ -0.54
YBX3-217ENST00000546164 BIRC2Q13490 618 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 LAMB3Q13751 1172 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 POU6F1Q14863 301 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 CYP1B1Q16678 543 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 INSCQ1MX18 579 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 AGAP9Q5VTM2 703 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 ABRAXAS1Q6UWZ7 409 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 PRUNE1Q86TP1 453 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 TRAPPC5Q8IUR0 188 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 LSMEM2Q8N112 164 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 NXPE1Q8N323 547 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 RASGEF1AQ8N9B8 481 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 Q8N9G6 341 aaPredicted RBP11.69□□□□□ -0.54
YBX3-217ENST00000546164 OR52K1Q8NGK4 314 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 HEXDCQ8WVB3 486 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 PEX13Q92968 403 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 ATXN7L3BQ96GX2 97 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 LIN37Q96GY3 246 aaPredicted RBP11.69□□□□□ -0.54
YBX3-217ENST00000546164 DNAJC1Q96KC8 554 aaKnown RBP11.69□□□□□ -0.54
YBX3-217ENST00000546164 TMEM74Q96NL1 305 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 RANBP9Q96S59 729 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 NAP1L3Q99457 506 aaPredicted RBP11.69□□□□□ -0.54
YBX3-217ENST00000546164 STN1Q9H668 368 aaKnown RBP11.69□□□□□ -0.54
YBX3-217ENST00000546164 POLR1BQ9H9Y6 1135 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 CASS4Q9NQ75 786 aa11.69□□□□□ -0.54
YBX3-217ENST00000546164 CHD6Q8TD26 2715 aa11.68□□□□□ -0.54
YBX3-217ENST00000546164 ZNF106Q9H2Y7 1883 aaKnown RBP11.68□□□□□ -0.54
YBX3-217ENST00000546164 CFAP47Q6ZTR5 3102 aa11.68□□□□□ -0.54
YBX3-217ENST00000546164 IGLV3-16A0A075B6K0 115 aa11.68□□□□□ -0.54
YBX3-217ENST00000546164 CCDC187A0A096LP49 1063 aa11.68□□□□□ -0.54
YBX3-217ENST00000546164 A0A1W2PNU3 283 aaPredicted RBP11.68□□□□□ -0.54
YBX3-217ENST00000546164 HEATR9A2RTY3 570 aa11.68□□□□□ -0.54
YBX3-217ENST00000546164 SRRM3A6NNA2 597 aaPredicted RBP11.68□□□□□ -0.54
YBX3-217ENST00000546164 PGRMC1O00264 195 aaKnown RBP11.68□□□□□ -0.54
YBX3-217ENST00000546164 BRINP1O60477 761 aa11.68□□□□□ -0.54
YBX3-217ENST00000546164 CPNE6O95741 557 aa11.68□□□□□ -0.54
YBX3-217ENST00000546164 GAS8O95995 478 aa11.68□□□□□ -0.54
YBX3-217ENST00000546164 XRCC1P18887 633 aaPredicted RBP11.68□□□□□ -0.54
YBX3-217ENST00000546164 MSH3P20585 1137 aa11.68□□□□□ -0.54
YBX3-217ENST00000546164 IDSP22304 550 aa11.68□□□□□ -0.54
YBX3-217ENST00000546164 CD1CP29017 333 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms