RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ZCCHC8Q6NZY4 707 aaKnown RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 SYCE2Q6PIF2 218 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 FAM131AQ6UXB0 335 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 TRIM48Q8IWZ4 208 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 SPPL2BQ8TCT7 592 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 CINPQ9BW66 212 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 YTHDF1Q9BYJ9 559 aaKnown RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 CLEC4MQ9H2X3 399 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 MTPAPQ9NVV4 582 aaKnown RBP eCLIP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 CRNNQ9UBG3 495 aaPredicted RBP14.13□□□□□ -0.15
LIMS1-215ENST00000544547 ZNHIT2Q9UHR6 403 aa14.13□□□□□ -0.15
LIMS1-215ENST00000544547 GPR182O15218 404 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 AP1G1O43747 822 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 PLOD3O60568 738 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 MBL2P11226 248 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 ARSAP15289 507 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 DDX5P17844 614 aaKnown RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 MATN1P21941 496 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 MYF6P23409 242 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 S100A3P33764 101 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 RABGGTBP53611 331 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 PLA2G16P53816 162 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 GJA9P57773 515 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 NCS1P62166 190 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 SLC10A2Q12908 348 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 NCBP2-AS2Q69YL0 99 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 PLEKHG7Q6ZR37 379 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 COQ3Q9NZJ6 369 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 CNOT11Q9UKZ1 510 aaKnown RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 PCDHB3Q9Y5E6 796 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 PCDHGA3Q9Y5H0 932 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 A0A1B0GUL6 1792 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 NOS1APO75052 506 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 PDE9AO76083 593 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 AQP1P29972 269 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 CLK3P49761 638 aaKnown RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 RBM48Q5RL73 367 aaKnown RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 CCBE1Q6UXH8 406 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 GPSM1Q86YR5 675 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 ARFGAP1Q8N6T3 406 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 CNIH3Q8TBE1 160 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 COLEC11Q9BWP8 271 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 PAQR5Q9NXK6 330 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF214Q9UL59 606 aaPredicted RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 ITGB4P16144 1822 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 OR6C70A6NIJ9 312 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 CD3EAPO15446 510 aaKnown RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 B4GALT4O60513 344 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 AKR1D1P51857 326 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 TIMM50Q3ZCQ8 353 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 DSG4Q86SJ6 1040 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 C14orf80Q86SX3 495 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 SLC15A3Q8IY34 581 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 ACDQ96AP0 544 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 KCNA7Q96RP8 456 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 ADARB2Q9NS39 739 aaKnown RBP14.12□□□□□ -0.15
LIMS1-215ENST00000544547 C14orf119Q9NWQ9 140 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF112Q9UJU3 913 aa14.12□□□□□ -0.15
LIMS1-215ENST00000544547 GRID2O43424 1007 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 MSCO60682 206 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 RFPL2O75678 378 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 LRATO95237 230 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 HOXC6P09630 235 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 KCNAB2Q13303 367 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 RFX4Q33E94 735 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 CYP2U1Q7Z449 544 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 KRT73Q86Y46 540 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 PEX5LQ8IYB4 626 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 TMEM102Q8N9M5 508 aaPredicted RBP14.11□□□□□ -0.15
LIMS1-215ENST00000544547 CHPT1Q8WUD6 406 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 SH3YL1Q96HL8 342 aaPredicted RBP14.11□□□□□ -0.15
LIMS1-215ENST00000544547 CCNB1IP1Q9NPC3 277 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 PCDHB7Q9Y5E2 793 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 hCG_2039718K7EN88 272 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 M0QX08 132 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 ADAM23O75077 832 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 RAP2AP10114 183 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 ADRA1BP35368 520 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 FPGSQ05932 587 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 RBM20Q5T481 1227 aaKnown RBP14.11□□□□□ -0.15
LIMS1-215ENST00000544547 LYSMD3Q7Z3D4 306 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 PNPLA1Q8N8W4 532 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 VPS37AQ8NEZ2 397 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 C18orf25Q96B23 403 aaPredicted RBP14.11□□□□□ -0.15
LIMS1-215ENST00000544547 HAPLN2Q9GZV7 340 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 ADAMTS10Q9H324 1103 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 ZNF224Q9NZL3 707 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 SPASTQ9UBP0 616 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 MICAL3Q7RTP6 2002 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 MOXD2PA6NHM9 499 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 FAM47E-STBD1D6RA91 191 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 AREL1O15033 823 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 NBNO60934 754 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 DIO3P55073 304 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 WNT3AP56704 352 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 ABATP80404 500 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 EFEMP1Q12805 493 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 TUBA3CQ13748 450 aa14.11□□□□□ -0.15
LIMS1-215ENST00000544547 C6orf141Q5SZD1 244 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms