RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 BTN2A3PQ96KV6 586 aa13.61□□□□□ -0.23
VPS33A-208ENST00000543633 ZNF382Q96SR6 550 aa13.61□□□□□ -0.23
VPS33A-208ENST00000543633 PAAF1Q9BRP4 392 aa13.61□□□□□ -0.23
VPS33A-208ENST00000543633 CHID1Q9BWS9 393 aa13.61□□□□□ -0.23
VPS33A-208ENST00000543633 FBXO44Q9H4M3 255 aa13.61□□□□□ -0.23
VPS33A-208ENST00000543633 NANOGQ9H9S0 305 aa13.61□□□□□ -0.23
VPS33A-208ENST00000543633 KCTD3Q9Y597 815 aa13.61□□□□□ -0.23
VPS33A-208ENST00000543633 PCDHGA11Q9Y5H2 935 aa13.61□□□□□ -0.23
VPS33A-208ENST00000543633 DRGXA6NNA5 263 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 C16orf96A6NNT2 1141 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 SOBPA7XYQ1 873 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 RAMP2O60895 175 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 KATNA1O75449 491 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 NDST3O95803 873 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 GSTM2P28161 218 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 GRIK1P39086 918 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 BRCC3P46736 316 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 SREBF2Q12772 1141 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 EML3Q32P44 896 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 FAM98BQ52LJ0 330 aaKnown RBP13.6□□□□□ -0.23
VPS33A-208ENST00000543633 FGD3Q5JSP0 725 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 TTC23Q5W5X9 447 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 LINC00299Q6ZSB3 139 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 TFAP2DQ7Z6R9 452 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 SYVN1Q86TM6 617 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 FUBP1Q96AE4 644 aaKnown RBP13.6□□□□□ -0.23
VPS33A-208ENST00000543633 HPS4Q9NQG7 708 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 BLOC1S6Q9UL45 172 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 PCDHB8Q9UN66 801 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 ARL5AQ9Y689 179 aa13.6□□□□□ -0.23
VPS33A-208ENST00000543633 UPK1AO00322 258 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 GPR182O15218 404 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 KPNA6O60684 536 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 PRAMEF11O60813 436 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 ALPLP05186 524 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 ANXA6P08133 673 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 UGT1A1P22309 533 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 UGT1A4P22310 534 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 MAP4P27816 1152 aaKnown RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 UGT1A3P35503 534 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 UGT1A5P35504 534 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 ZNF140P52738 457 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 CRHR2Q13324 411 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 TOP3AQ13472 1001 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 SKIV2LQ15477 1246 aaKnown RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 SLC44A4Q53GD3 710 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 DCDC5Q6ZRR9 648 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 GPRIN3Q6ZVF9 776 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 THAP5Q7Z6K1 395 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 IFNEQ86WN2 208 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 SPNS2Q8IVW8 549 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 HOMEZQ8IX15 550 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 RNF168Q8IYW5 571 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 OR8J3Q8NGG0 315 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 OR52E4Q8NGH9 312 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 BLOC1S5Q8TDH9 187 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 VPS33AQ96AX1 596 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 ITPKCQ96DU7 683 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 FUBP3Q96I24 572 aaKnown RBP eCLIP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 SEMA3CQ99985 751 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 BCL7BQ9BQE9 202 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 RETREG1Q9H6L5 497 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 SEMA4BQ9NPR2 832 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 OLA1Q9NTK5 396 aaKnown RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 COMMD8Q9NX08 183 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 USE1Q9NZ43 259 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 AP3M1Q9Y2T2 418 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 COMMD10Q9Y6G5 202 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 GREB1Q4ZG55 1949 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 CHD5Q8TDI0 1954 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 C9JVG2 144 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 PFDN6O15212 129 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 CLIC3O95833 236 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 BCL10O95999 233 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 NCK1P16333 377 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 PGFP49763 221 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 APLP1P51693 650 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 UFM1P61960 85 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 YBX1P67809 324 aaKnown RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 PURAQ00577 322 aaKnown RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 MAP2K5Q13163 448 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 ZNF235Q14590 738 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 POLD3Q15054 466 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 TSNQ15631 228 aaKnown RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 TRIP4Q15650 581 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 NEDD8Q15843 81 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 TIGD2Q4W5G0 525 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 SETMARQ53H47 684 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 GLYATQ6IB77 296 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 PAQR3Q6TCH7 311 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 C8orf59Q8N0T1 100 aaPredicted RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 SVOPLQ8N434 492 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 SNRNP27Q8WVK2 155 aaKnown RBP13.59□□□□□ -0.23
VPS33A-208ENST00000543633 CDKN2AIPNLQ96HQ2 116 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 C8orf48Q96LL4 319 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 TEX37Q96LM6 180 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 FEM1AQ9BSK4 669 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 NTN4Q9HB63 628 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 ZFYVE28Q9HCC9 887 aa13.59□□□□□ -0.23
VPS33A-208ENST00000543633 PSME2Q9UL46 239 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms