RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 TRIM44Q96DX7 344 aaPredicted RBP5.14□□□□□ -1.59
CLIP1-217ENST00000543205 HES6Q96HZ4 224 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 ELF4Q99607 663 aaPredicted RBP5.14□□□□□ -1.59
CLIP1-217ENST00000543205 HEMGNQ9BXL5 484 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 ZDHHC5Q9C0B5 715 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 KLC2Q9H0B6 622 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 TMEM245Q9H330 911 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 SP110Q9HB58 689 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 POLR3BQ9NW08 1133 aaPredicted RBP5.14□□□□□ -1.59
CLIP1-217ENST00000543205 UBA2Q9UBT2 640 aaPredicted RBP5.14□□□□□ -1.59
CLIP1-217ENST00000543205 BLOC1S6Q9UL45 172 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 PCDHGB4Q9UN71 923 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 HS3ST2Q9Y278 367 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 MFHAS1Q9Y4C4 1052 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 HEY1Q9Y5J3 304 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 RAD54BQ9Y620 910 aa5.14□□□□□ -1.59
CLIP1-217ENST00000543205 FAM186AA6NE01 2351 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 KIAA1549LQ6ZVL6 1849 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 hCG_1818297A0A087WSY0 165 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 TARSL2A2RTX5 802 aaKnown RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 J3KR12 359 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 K7ERQ8 282 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 DVL2O14641 736 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 MFSD11O43934 449 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 CST8O60676 142 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PRAMEF11O60813 436 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 RNASEH1O60930 286 aaKnown RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 B3GALNT1O75752 331 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 ZMPSTE24O75844 475 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 NEBLO76041 1014 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 TJP3O95049 919 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PAPSS2O95340 614 aaPredicted RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 APBB3O95704 486 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 SRCP12931 536 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PORP16435 677 aaPredicted RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 TGM2P21980 687 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 SERPINF1P36955 418 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 NR2C2P49116 596 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 SERPINH1P50454 418 aaKnown RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 CCR5P51681 352 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 IFI35P80217 286 aaPredicted RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 MRPS35P82673 323 aaKnown RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 ARF5P84085 180 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 IL10RBQ08334 325 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 RASA2Q15283 850 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 ANGPT1Q15389 498 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 CPSF6Q16630 551 aaKnown RBP eCLIP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 HNRNPA1L2Q32P51 320 aaKnown RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 SLC9A4Q6AI14 798 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 POMZP3Q6PJE2 187 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 ARHGAP36Q6ZRI8 547 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 SDCCAG8Q86SQ7 713 aaPredicted RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 CEP97Q8IW35 865 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 ARHGAP12Q8IWW6 846 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 RYBPQ8N488 228 aaPredicted RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PLD5Q8N7P1 536 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 CCNYQ8ND76 341 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 HMGB4Q8WW32 186 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 CASKIN2Q8WXE0 1202 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 P3H4Q92791 437 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 CCDC114Q96M63 670 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 KCNC2Q96PR1 638 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PRRX2Q99811 253 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 OSBPL8Q9BZF1 889 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 GP6Q9HCN6 339 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PRSS16Q9NQE7 514 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PRMT8Q9NR22 394 aaPredicted RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 KRT84Q9NSB2 600 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PIH1D1Q9NWS0 290 aaKnown RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 C2orf42Q9NWW7 574 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 RABL2AQ9UBK7 228 aaPredicted RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 IPO11Q9UI26 975 aaKnown RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 FBXO4Q9UKT5 387 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 JRKLQ9Y4A0 524 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 WDFY4Q6ZS81 3184 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 MIA3Q5JRA6 1907 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 GVINP1Q7Z2Y8 2422 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 A0A1W2PPC4 97 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 A0A1W2PQF6 199 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 FAM234BA2RU67 622 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 USP27XA6NNY8 438 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 KCNK3O14649 394 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 SMAD6O43541 496 aaKnown RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 TNFRSF6BO95407 300 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 CBX7O95931 251 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 ACADMP11310 421 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 VAV1P15498 845 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 HOXC12P31275 282 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 MC4RP32245 332 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PTPN7P35236 360 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 GARSP41250 739 aaKnown RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 SEC24CP53992 1094 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 SLC12A2P55011 1212 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 RHOAP61586 193 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 SNRPD1P62314 119 aaKnown RBP5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PHC1P78364 1004 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 PPARDQ03181 441 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 GBE1Q04446 702 aa5.13□□□□□ -1.59
CLIP1-217ENST00000543205 GALNT2Q10471 571 aa5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms