RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 PCSK6P29122 969 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 TYK2P29597 1187 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 EEF1DP29692 281 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 HOXA13P31271 388 aaPredicted RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 CDH5P33151 784 aaPredicted RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 SPRP35270 261 aaPredicted RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 SERPINB5P36952 375 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 PSMD8P48556 350 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 NR2C2P49116 596 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 ERFP50548 548 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 HNRNPFP52597 415 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 SNAP25P60880 206 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 RPS6P62753 249 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 RHDQ02161 417 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 PRKAA1Q13131 559 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 KRR1Q13601 381 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 PDE1CQ14123 709 aaPredicted RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 TRIM25Q14258 630 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 KCTD2Q14681 263 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 NR1D2Q14995 579 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 PCBP2Q15366 365 aaKnown RBP eCLIP6.58□□□□□ -1.36
USP28-202ENST00000535607 MGAT5BQ3V5L5 792 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 ZMAT1Q5H9K5 638 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 SAMD4BQ5PRF9 694 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 GJC2Q5T442 439 aaPredicted RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 INTS11Q5TA45 600 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 TMEM200BQ69YZ2 307 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 ABRAXAS1Q6UWZ7 409 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 B3GNT9Q6UX72 402 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 ZBTB49Q6ZSB9 765 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 SNX32Q86XE0 403 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 UNC45BQ8IWX7 931 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 CHPFQ8IZ52 775 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 CARFQ8N187 725 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 CBARPQ8N350 705 aaPredicted RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 TTC39CQ8N584 583 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 SNX31Q8N9S9 440 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 TDRD5Q8NAT2 981 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 SLC4A11Q8NBS3 891 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 TMEM161BQ8NDZ6 487 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 CMASQ8NFW8 434 aaPredicted RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 NSUN6Q8TEA1 469 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 RAB2BQ8WUD1 216 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 FATE1Q969F0 183 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 PPWD1Q96BP3 646 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 C12orf43Q96C57 262 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 LCORQ96JN0 433 aaPredicted RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 CDHR1Q96JP9 859 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 TOX2Q96NM4 488 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 CGRRF1Q99675 332 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 DOK1Q99704 481 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 CPNE1Q99829 537 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 PKP2Q99959 881 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 BCL7BQ9BQE9 202 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 FAM213AQ9BRX8 229 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 CALN1Q9BXU9 219 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 DNAI2Q9GZS0 605 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 LHX5Q9H2C1 402 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 IKZF4Q9H2S9 585 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 C12orf65Q9H3J6 166 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 MUC13Q9H3R2 512 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 COG4Q9H9E3 785 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 CXorf21Q9HAI6 301 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 POPDC2Q9HBU9 364 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 TXNRD2Q9NNW7 524 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 ACP6Q9NPH0 428 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 ZIM2Q9NZV7 527 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 DKK3Q9UBP4 350 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 SATB2Q9UPW6 733 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 ERGIC3Q9Y282 383 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 TDRKHQ9Y2W6 561 aaKnown RBP6.58□□□□□ -1.36
USP28-202ENST00000535607 GIT1Q9Y2X7 761 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 RAP2CQ9Y3L5 183 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 CASP8AP2Q9UKL3 1982 aa6.58□□□□□ -1.36
USP28-202ENST00000535607 SLC15A5A6NIM6 579 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 LRRIQ4A6NIV6 560 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 C3orf70A6NLC5 250 aaPredicted RBP6.57□□□□□ -1.36
USP28-202ENST00000535607 F8VP50 259 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 MAGEB3O15480 346 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 CFLARO15519 480 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 KCNN4O15554 427 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 TIMM44O43615 452 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 PRPSAP2O60256 369 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 UGT1A9O60656 530 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 TRIM13O60858 407 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 SULT1C4O75897 302 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 PARNO95453 639 aaKnown RBP6.57□□□□□ -1.36
USP28-202ENST00000535607 POLBP06746 335 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 APRTP07741 180 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 CYP2C9P11712 490 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 P4HA1P13674 534 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 ENO3P13929 434 aaPredicted RBP6.57□□□□□ -1.36
USP28-202ENST00000535607 PGAM1P18669 254 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 UGT1A6P19224 532 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 ACO1P21399 889 aaKnown RBP6.57□□□□□ -1.36
USP28-202ENST00000535607 UGT1A1P22309 533 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 UGT1A4P22310 534 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 MYF6P23409 242 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 EDNRBP24530 442 aa6.57□□□□□ -1.36
USP28-202ENST00000535607 CCND2P30279 289 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms