RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 MARCH4Q9P2E8 410 aaPredicted RBP3.79□□□□□ -1.8
CD44-217ENST00000525348 STK39Q9UEW8 545 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 LIMA1Q9UHB6 759 aaKnown RBP3.79□□□□□ -1.8
CD44-217ENST00000525348 POLG2Q9UHN1 485 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 KCNE2Q9Y6J6 123 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 PIAS3Q9Y6X2 628 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 ARHGEF40Q8TER5 1519 aa3.79□□□□□ -1.8
CD44-217ENST00000525348 CFAP65Q6ZU64 1925 aaKnown RBP3.78□□□□□ -1.8
CD44-217ENST00000525348 SYNRGQ9UMZ2 1314 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 IGLV5-45A0A087WSX0 123 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 NPHP1O15259 732 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 SYNGR3O43761 229 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 SH3BP5O60239 455 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 SLC25A12O75746 678 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 IPO7O95373 1038 aaKnown RBP3.78□□□□□ -1.8
CD44-217ENST00000525348 GM2AP17900 193 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 CD151P48509 253 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 HOXA1P49639 335 aaPredicted RBP3.78□□□□□ -1.8
CD44-217ENST00000525348 MED22Q15528 200 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 ALFQ53S48 1182 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 WDR78Q5VTH9 848 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 ARHGAP17Q68EM7 881 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 PLXDC2Q6UX71 529 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 ANO5Q75V66 913 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 RASGEF1CQ8N431 466 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 UTP15Q8TED0 518 aaKnown RBP3.78□□□□□ -1.8
CD44-217ENST00000525348 PHF21AQ96BD5 680 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 FBXO17Q96EF6 278 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 ZNF354BQ96LW1 612 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 FAM210AQ96ND0 272 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 LRMDAQ9H2I8 198 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 TFB2MQ9H5Q4 396 aaKnown RBP3.78□□□□□ -1.8
CD44-217ENST00000525348 MAGIXQ9H6Y5 334 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 TCP11L1Q9NUJ3 509 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 DDX43Q9NXZ2 648 aaKnown RBP3.78□□□□□ -1.8
CD44-217ENST00000525348 PRAG1Q86YV5 1406 aa3.78□□□□□ -1.8
CD44-217ENST00000525348 CCDC189A1A4V9 331 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 EIF4E1BA6NMX2 242 aaKnown RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 PMS2P5A8MQ11 134 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 H3BQ06 376 aaPredicted RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 HCRTR2O43614 444 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 PLPP2O43688 288 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 PRKNO60260 465 aaPredicted RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 BAG4O95429 457 aaKnown RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 CGAP01215 116 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 IGHDP01880 384 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 APOHP02749 345 aaPredicted RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 PRSS1P07477 247 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 TPM2P07951 284 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 ELF1P32519 619 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 AHRP35869 848 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 TAS2R40P59535 323 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 MRPS34P82930 218 aaKnown RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 MPP1Q00013 466 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 GAGE5Q13069 117 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 GAGE6Q13070 117 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 CEP85LQ5SZL2 805 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 CLEC17AQ6ZS10 378 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 DGLUCYQ7Z3D6 616 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 PIWIL4Q7Z3Z4 852 aaKnown RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 CPLX4Q7Z7G2 160 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 TSPAN33Q86UF1 283 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 ARHGAP12Q8IWW6 846 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 FRMD1Q8N878 549 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 SLC38A9Q8NBW4 561 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 ZKSCAN4Q969J2 545 aaPredicted RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 SCRN2Q96FV2 425 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 SEPT5Q99719 369 aaPredicted RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 SLC26A6Q9BXS9 759 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 RBM28Q9NW13 759 aaKnown RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 CWC15Q9P013 229 aaKnown RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 FBXW11Q9UKB1 542 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 B3GALT5Q9Y2C3 310 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 R3HDM2Q9Y2K5 976 aaKnown RBP3.77□□□□□ -1.81
CD44-217ENST00000525348 KIAA1210Q9ULL0 1709 aa3.77□□□□□ -1.81
CD44-217ENST00000525348 KAT6BQ8WYB5 2073 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 B4E171 279 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 EDIL3O43854 480 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 TMEM63AO94886 807 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 CD4P01730 458 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 PATE4P0C8F1 98 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 ACADLP28330 430 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 COPB2P35606 906 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 TSPAN7P41732 249 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 PRCPP42785 496 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 NR0B1P51843 470 aaKnown RBP3.76□□□□□ -1.81
CD44-217ENST00000525348 ATP12AP54707 1039 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 HILS1P60008 231 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 SPOCK1Q08629 439 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 NIPAL4Q0D2K0 466 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 PDE1CQ14123 709 aaPredicted RBP3.76□□□□□ -1.81
CD44-217ENST00000525348 ADIPOQQ15848 244 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 CDC37Q16543 378 aaPredicted RBP3.76□□□□□ -1.81
CD44-217ENST00000525348 WDR38Q5JTN6 314 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 CCNYL2Q5T2Q4 361 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 JAKMIP3Q5VZ66 844 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 TMTC3Q6ZXV5 915 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 PM20D2Q8IYS1 436 aa3.76□□□□□ -1.81
CD44-217ENST00000525348 HJURPQ8NCD3 748 aaPredicted RBP3.76□□□□□ -1.81
CD44-217ENST00000525348 OR10V1Q8NGI7 309 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms