RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 PRRC2CQ9Y520 2896 aaKnown RBP12.46□□□□□ -0.42
SKA1-205ENST00000494518 LRRD1A4D1F6 860 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 OR5K4A6NMS3 321 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 OR52A4PA6NMU1 304 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 F5H423 210 aaPredicted RBP12.45□□□□□ -0.42
SKA1-205ENST00000494518 KATNA1O75449 491 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 RASSF9O75901 435 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 UBXN7O94888 489 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 KRT7P08729 469 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 TNNT1P13805 278 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 KDELR1P24390 212 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 DLSTP36957 453 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 SLC19A1P41440 591 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 DRG2P55039 364 aaKnown RBP12.45□□□□□ -0.42
SKA1-205ENST00000494518 DYNLT1P63172 113 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 IFI35P80217 286 aaPredicted RBP12.45□□□□□ -0.42
SKA1-205ENST00000494518 PPIDQ08752 370 aaKnown RBP12.45□□□□□ -0.42
SKA1-205ENST00000494518 NOMO1Q15155 1222 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 FAM92BQ6ZTR7 304 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 TMEM26Q6ZUK4 368 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 RASGRP3Q8IV61 690 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 PLD5Q8N7P1 536 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 SPATA22Q8NHS9 363 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 CTNNBL1Q8WYA6 563 aaPredicted RBP12.45□□□□□ -0.42
SKA1-205ENST00000494518 GLYATL1Q969I3 302 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 OR6C1Q96RD1 312 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 TRIB3Q96RU7 358 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 ZPBPQ9BS86 351 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 ZSCAN5AQ9BUG6 496 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 TRIM39Q9HCM9 518 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 UBP1Q9NZI7 540 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 TUBD1Q9UJT1 453 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 CROTQ9UKG9 612 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 NENFQ9UMX5 172 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 TP53TG5Q9Y2B4 290 aa12.45□□□□□ -0.42
SKA1-205ENST00000494518 LUC7L2Q9Y383 392 aaKnown RBP12.45□□□□□ -0.42
SKA1-205ENST00000494518 SYCE3A1L190 88 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 RGSL1A5PLK6 1076 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 K7EM74 188 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 AURKAO14965 403 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 KIAA0754O94854 1291 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 MT-CYBP00156 380 aaPredicted RBP12.44□□□□□ -0.42
SKA1-205ENST00000494518 C9P02748 559 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 FURINP09958 794 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 ZNF7P17097 686 aaPredicted RBP12.44□□□□□ -0.42
SKA1-205ENST00000494518 BPIP17213 487 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 CASP14P31944 242 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 CASRP41180 1078 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 PPP1CAP62136 330 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 TPM4P67936 248 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 SRSF1Q07955 248 aaKnown RBP eCLIP12.44□□□□□ -0.42
SKA1-205ENST00000494518 ERV3-1Q14264 604 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 LACTB2Q53H82 288 aaPredicted RBP12.44□□□□□ -0.42
SKA1-205ENST00000494518 IRGCQ6NXR0 463 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 TMEM135Q86UB9 458 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 NT5DC3Q86UY8 548 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 LRRTM4Q86VH4 590 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 ZNF547Q8IVP9 402 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 RAVER1Q8IY67 606 aaKnown RBP12.44□□□□□ -0.42
SKA1-205ENST00000494518 TRAM1L1Q8N609 369 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 ESX1Q8N693 406 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.44□□□□□ -0.42
SKA1-205ENST00000494518 APOBEC4Q8WW27 367 aaKnown RBP12.44□□□□□ -0.42
SKA1-205ENST00000494518 STAMBPL1Q96FJ0 436 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 EFHD1Q9BUP0 239 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 TRIT1Q9H3H1 467 aaKnown RBP12.44□□□□□ -0.42
SKA1-205ENST00000494518 EPB41L1Q9H4G0 881 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 IFNKQ9P0W0 207 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 UVRAGQ9P2Y5 699 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 LNPEPQ9UIQ6 1025 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 PLAAQ9Y263 795 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 SPO11Q9Y5K1 396 aa12.44□□□□□ -0.42
SKA1-205ENST00000494518 CDC14CA4D256 554 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 PRR19A6NJB7 356 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 APOL1O14791 398 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 CHUKO15111 745 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 KMOO15229 486 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 GPR39O43194 453 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 PMPCBO75439 489 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 NDUFA10O95299 355 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 KRT1P04264 644 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 H2AFZP0C0S5 128 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 ANKRD34CP0C6C1 535 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 BRAFP15056 766 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 XRCC1P18887 633 aaPredicted RBP12.43□□□□□ -0.42
SKA1-205ENST00000494518 CLCNKAP51800 687 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 FOXK1P85037 733 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 MC1RQ01726 317 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 CDK18Q07002 472 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 GPR18Q14330 331 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 LLGL1Q15334 1064 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 CACHD1Q5VU97 1274 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 C6orf15Q6UXA7 325 aaPredicted RBP12.43□□□□□ -0.42
SKA1-205ENST00000494518 H2AFVQ71UI9 128 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 TMC3Q7Z5M5 1100 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 RFX6Q8HWS3 928 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 TRAPPC5Q8IUR0 188 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 GDAP1Q8TB36 358 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 CXorf40BQ96DE9 158 aa12.43□□□□□ -0.42
SKA1-205ENST00000494518 IMP4Q96G21 291 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms